API for ParkerICI/kumquat
Identification of stratifying subpopulations in Flow Cytometry Data (based on the Citrus package)
| Global functions | |
|---|---|
| .calculateTypeFDRRate | Source code |
| calculatePredictionErrorRate | Source code |
| citrus.buildEndpointModel | Man page Source code |
| citrus.buildFoldEndpointModel | Source code |
| citrus.buildFoldsEndpointModels | Man page Source code |
| citrus.buildModel.classification | Man page Source code |
| citrus.buildModel.continuous | Man page Source code |
| citrus.buildModel.survival | Source code |
| citrus.calculateModelPartialLikelihood | Source code |
| citrus.clusterDensityPlots | Source code |
| citrus.convertConditionMatrix | Source code |
| citrus.cvIteration.survival | Source code |
| citrus.densityPlotGrid | Source code |
| citrus.endpointRegress | Man page Source code |
| citrus.extractModelFeatures | Man page Source code |
| citrus.generateRegularizationThresholds | Man page Source code |
| citrus.generateRegularizationThresholds.classification | Man page Source code |
| citrus.generateRegularizationThresholds.continuous | Man page Source code |
| citrus.generateRegularizationThresholds.survival | Source code |
| citrus.getCVMinima | Man page Source code |
| citrus.modelTypes | Man page Source code |
| citrus.plotClusters | Man page Source code |
| citrus.plotModelDifferentialFeatures.classification | Source code |
| citrus.plotModelDifferentialFeatures.continuous | Source code |
| citrus.plotTypeErrorRate | Source code |
| citrus.predict | Man page Source code |
| citrus.predict.classification | Man page Source code |
| citrus.predict.continuous | Man page Source code |
| citrus.predict.survival | Source code |
| citrus.selectClusters | Man page Source code |
| citrus.selectClusters.minimumClusterSize | Man page Source code |
| citrus.thresholdCVs | Man page Source code |
| citrus.thresholdCVs.quick | Man page Source code |
| citrus.thresholdCVs.quick.classification | Man page Source code |
| citrus.thresholdCVs.quick.continuous | Man page Source code |
| citrus.thresholdCVs.survival | Source code |
| foldPredict.classification | Source code |
| foldPredict.continuous | Source code |
| foldScore.classification | Source code |
| foldScore.continuous | Source code |
| getFeaturesPlot.classification | Source code |
| get_cluster_features | Man page Source code |
| get_model | Man page Source code |
| get_signifcant_features_matrix | Source code |
| kumquat | Man page |
| multistep_normalize | Man page Source code |
| pamr.fdr.new | Source code |
| plot.citrus.full.result | Man page Source code |
| plot_error_rate | Man page Source code |
| plot_stratifying_clusters | Man page Source code |
| plot_stratifying_features | Man page Source code |
| print.citrus.endpointModel | Source code |
| run_analysis | Man page Source code |
| select_score_by_cluster | Source code |
