citrus.buildFoldsEndpointModels: Build models from each fold of clustering

In ParkerICI/kumquat: Identification of stratifying subpopulations in Flow Cytometry Data (based on the Citrus package)

Description

Builds a model from features derived from each independent fold of clustering.

Usage

citrus.buildFoldsEndpointModels(
  type,
  citrus.foldFeatureSet,
  labels,
  regularizationThresholds = NULL,
  family = "classification",
  ...
)

Arguments

type	Model Type. Valid options are pamr, glmnet, and sam.
labels	Endpoint labels for samples.
regularizationThresholds	Regularization thresholds for penalized models.
family	Family of model to be constructed. Valid options are classification and continuous.
...	Other arguments passed to model-fitting functions.
citrus.foldFeatureSet.	A citrus.foldFeatureSet object.

Value

A list of models, one model fit on each fold's feature set.

Author(s)

Robert Bruggner

ParkerICI/kumquat documentation built on Dec. 18, 2021, 6:40 a.m.