Description Usage Arguments Details Value
This function converts a flowFrame
object to an R data.frame, taking care of data
transformation and compensation.
1 2 3 4 5 6 7 | convert_fcs(
f,
asinh.cofactor = NULL,
compensate = T,
negative.values = "truncate",
quantile.prob = 0.05
)
|
f |
The |
asinh.cofactor |
Cofactor for |
compensate |
Wether to compensate the data using the compensation matrix embedded in the |
negative.values |
How to deal with negative values in the data. If this is
|
quantile.prob |
Only used if |
The column names of the resulting data.frame will be derived from the channel descriptions (i.e. $PxS FCS keyword) when possible, and the cannel names otherwise ($PxN)
Returns a data.frame
corresponding to the data in flowCore::exprs(f)
after compensation
and transformation
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