SciBet: Classify cells of a given query dataset using a reference...
In PaulingLiu/scibet: SciBet(Single-Cell Identifier Based on Entropy Test)
Description
Usage
Arguments
Examples
Description
SciBet main function. Train SciBet with the reference dataset to assign cell types for the query dataset.
Usage
1
Arguments
train
The reference dataset, with rows being cells, and columns being genes. The last column should be "label".
test
The query dataset. Rows should be cells and columns should be genes.
k
Number of genes to select according to the total entropy differneces among cell types.
Examples
1
SciBet(train.matr, query.matr)
PaulingLiu/scibet documentation built on April 17, 2021, 7:33 a.m.
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Description Usage Arguments Examples
Description
SciBet main function. Train SciBet with the reference dataset to assign cell types for the query dataset.
Usage
1 |
Arguments
train |
The reference dataset, with rows being cells, and columns being genes. The last column should be "label". |
test |
The query dataset. Rows should be cells and columns should be genes. |
k |
Number of genes to select according to the total entropy differneces among cell types. |
Examples
1 | SciBet(train.matr, query.matr)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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