nls_peak: Uses nlsLM to fit 2p peak model
In PauloMoraMartinez/Genomescope2.0_: Reference-free profiling of genomes

nls_peak

R Documentation

Uses nlsLM to fit 2p peak model

Uses nlsLM to fit 2p peak model

nls_peak(x, y, k, p, top, estKmercov, estLength, max_iterations)

`x`	An integer vector of the x-coordinates of the histogram (after filtering out low coverage errors and high coverage kmers).
`y`	A numeric vector of the y-coordinates of the histogram (after filtering out low coverage errors and high coverage kmers).
`k`	An integer corresponding to the kmer length.
`p`	An integer corresponding to the ploidy.
`top`	An integer corresponding to the topology.
`estKmercov`	A numeric corresponding to the estimated average kmer coverage of the polyploid genome.
`estLength`	A numeric corresponding to the estimated polyploid genome length.
`max_iterations`	An integer corresponding to the maximum number iterations to use for nlsLM.