report_results: Report results and make plots

In PauloMoraMartinez/Genomescope2.0_: Reference-free profiling of genomes

Report results and make plots

Description

Report results and make plots

Usage

report_results(kmer_hist, kmer_hist_orig, k, p, container, foldername,
  arguments, IN_VERBOSE)

Arguments

kmer_hist	A data frame of the original histogram data (starting at 1 and going up to the max kmer coverage threshold).
kmer_hist_orig	A data frame of the original histogram data (starting at 1 and with last position removed).
k	An integer corresponding to the kmer length.
p	An integer corresponding to the ploidy.
container	A list (nls, nlsscore) where nls is the nlsLM model object (with some additional components) and nlsscore is the score (model RSSE) corresponding to the best fit (of the p forms).
foldername	A character vector corresponding to the name of the output directory.
arguments	A data frame of the user-specified inputs.
IN_VERBOSE	A boolean flag to designate whether report_results is being called in a VERBOSE block.

PauloMoraMartinez/Genomescope2.0_ documentation built on April 5, 2022, 12:02 a.m.