Files in PavlidisLab/Gemma-API

A wrapper for Gemma's Restful API to access curated gene expression data and differential expression analyses

.github/ISSUE_TEMPLATE/issue_template.md LICENSE.md NEWS.md R/aa_caching.R R/allEndpoints.R R/body.R R/commonArguments.R R/convenience.R R/deprecation.R R/gemma.R.R R/kable.R R/processors.R R/subProcessors.R R/validators.R README.Rmd README.md inst/script/registry.R inst/script/registry_helpers.R man/accessField.Rd man/blank_processor.Rd man/checkBounds.Rd man/dot-getResultSets.Rd man/encode.Rd man/filter_properties.Rd man/forget_gemma_memoised.Rd man/gemma.R.Rd man/gemmaCache.Rd man/gemmaPath.Rd man/gemma_call.Rd man/gemma_kable.Rd man/gemma_memoise.Rd man/get_all_pages.Rd man/get_child_terms.Rd man/get_dataset_annotations.Rd man/get_dataset_design.Rd man/get_dataset_differential_expression_analyses.Rd man/get_dataset_expression.Rd man/get_dataset_expression_for_genes.Rd man/get_dataset_object.Rd man/get_dataset_platforms.Rd man/get_dataset_processed_expression.Rd man/get_dataset_quantitation_types.Rd man/get_dataset_raw_expression.Rd man/get_dataset_samples.Rd man/get_datasets.Rd man/get_datasets_by_ids.Rd man/get_differential_expression_values.Rd man/get_gene_differential_expression_values.Rd man/get_gene_go_terms.Rd man/get_gene_locations.Rd man/get_gene_probes.Rd man/get_genes.Rd man/get_platform_annotations.Rd man/get_platform_datasets.Rd man/get_platform_element_genes.Rd man/get_platforms_by_ids.Rd man/get_result_sets.Rd man/get_taxa.Rd man/get_taxa_by_ids.Rd man/get_taxon_datasets.Rd man/isEmpty.Rd man/make_design.Rd man/memoise.Rd man/nullCheck.Rd man/processAnnotations.Rd man/processCharacteristicValueObject.Rd man/processDEA.Rd man/processDEMatrix.Rd man/processDEcontrasts.Rd man/processDatasetResultSets.Rd man/processDatasets.Rd man/processDesignMatrix.Rd man/processDifferentialExpressionAnalysisResultByGeneValueObject_tsv.Rd man/processDifferentialExpressionAnalysisResultSetValueObject.Rd man/processElements.Rd man/processExpressionMatrix.Rd man/processFile.Rd man/processGO.Rd man/processGemmaArray.Rd man/processGeneLocation.Rd man/processGenes.Rd man/processPlatforms.Rd man/processQuantitationTypeValueObject.Rd man/processResultSetFactors.Rd man/processSamples.Rd man/processSearchAnnotations.Rd man/processTaxon.Rd man/process_search.Rd man/search_annotations.Rd man/search_datasets.Rd man/search_gemma.Rd man/setGemmaPath.Rd man/set_gemma_user.Rd man/subset_factorValues.Rd man/update_result.Rd man/validateBoolean.Rd man/validateID.Rd man/validateLimit.Rd man/validateOptionalID.Rd man/validateOptionalQuery.Rd man/validateOptionalTaxon.Rd man/validatePositiveInteger.Rd man/validateQuery.Rd man/validateResultType.Rd man/validateSingleID.Rd man/validateSort.Rd man/validateTaxa.Rd man/validateTaxon.Rd posterExample.R tests/testthat.R tests/testthat/testCaches.R tests/testthat/testCompression.R tests/testthat/testConvenience.R tests/testthat/testDatasetEndpoints.R tests/testthat/testEmpty.R tests/testthat/testGeneEndpoints.R tests/testthat/testMisc.R tests/testthat/testOrderSanity.R tests/testthat/testPlatformEndpoints.R tests/testthat/testProcessors.R tests/testthat/testTaxonEndpoints.R tests/testthat/testValidators.R vignettes/gemma.R.Rmd vignettes/metadata.Rmd vignettes/metanalysis.Rmd