Files in PavlidisLab/Gemma-API
A wrapper for Gemma's Restful API to access curated gene expression data and differential expression analyses
.Rbuildignore
.github/.gitignore
.github/ISSUE_TEMPLATE/issue_template.md
.github/workflows/check-bioc.yml
.github/workflows/pkgdown.yaml
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/aa_caching.R
R/allEndpoints.R
R/body.R
R/commonArguments.R
R/convenience.R
R/deprecation.R
R/gemma.R.R
R/kable.R
R/processors.R
R/subProcessors.R
R/validators.R
README.Rmd
README.md
codecov.yml
inst/CITATION
inst/script/cheat_cheet_source.odg
inst/script/openapi.json
inst/script/registry.R
inst/script/registry_helpers.R
man/accessField.Rd
man/blank_processor.Rd
man/checkBounds.Rd
man/dot-getResultSets.Rd
man/encode.Rd
man/figures/logo.png
man/filter_properties.Rd
man/forget_gemma_memoised.Rd
man/gemma.R.Rd
man/gemmaCache.Rd
man/gemmaPath.Rd
man/gemma_call.Rd
man/gemma_kable.Rd
man/gemma_memoise.Rd
man/get_all_pages.Rd
man/get_child_terms.Rd
man/get_dataset_annotations.Rd
man/get_dataset_design.Rd
man/get_dataset_differential_expression_analyses.Rd
man/get_dataset_expression.Rd
man/get_dataset_expression_for_genes.Rd
man/get_dataset_object.Rd
man/get_dataset_platforms.Rd
man/get_dataset_processed_expression.Rd
man/get_dataset_quantitation_types.Rd
man/get_dataset_raw_expression.Rd
man/get_dataset_samples.Rd
man/get_datasets.Rd
man/get_datasets_by_ids.Rd
man/get_differential_expression_values.Rd
man/get_gene_go_terms.Rd
man/get_gene_locations.Rd
man/get_gene_probes.Rd
man/get_genes.Rd
man/get_platform_annotations.Rd
man/get_platform_datasets.Rd
man/get_platform_element_genes.Rd
man/get_platforms_by_ids.Rd
man/get_result_sets.Rd
man/get_taxa.Rd
man/get_taxa_by_ids.Rd
man/get_taxon_datasets.Rd
man/isEmpty.Rd
man/make_design.Rd
man/memoise.Rd
man/nullCheck.Rd
man/processAnnotations.Rd
man/processCharacteristicValueObject.Rd
man/processDEA.Rd
man/processDEMatrix.Rd
man/processDEcontrasts.Rd
man/processDatasetResultSets.Rd
man/processDatasets.Rd
man/processDesignMatrix.Rd
man/processDifferentialExpressionAnalysisResultSetValueObject.Rd
man/processElements.Rd
man/processExpressionMatrix.Rd
man/processFile.Rd
man/processGO.Rd
man/processGemmaArray.Rd
man/processGeneLocation.Rd
man/processGenes.Rd
man/processPlatforms.Rd
man/processQuantitationTypeValueObject.Rd
man/processResultSetFactors.Rd
man/processSamples.Rd
man/processSearchAnnotations.Rd
man/processTaxon.Rd
man/process_search.Rd
man/search_annotations.Rd
man/search_datasets.Rd
man/search_gemma.Rd
man/setGemmaPath.Rd
man/set_gemma_user.Rd
man/subset_factorValues.Rd
man/update_result.Rd
man/validateBoolean.Rd
man/validateID.Rd
man/validateLimit.Rd
man/validateOptionalID.Rd
man/validateOptionalQuery.Rd
man/validateOptionalTaxon.Rd
man/validatePositiveInteger.Rd
man/validateQuery.Rd
man/validateResultType.Rd
man/validateSingleID.Rd
man/validateSort.Rd
man/validateTaxa.Rd
man/validateTaxon.Rd
pkgdown/_pkgdown.yml
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/testthat.R
tests/testthat/testCaches.R
tests/testthat/testConvenience.R
tests/testthat/testDatasetEndpoints.R
tests/testthat/testGeneEndpoints.R
tests/testthat/testMisc.R
tests/testthat/testPlatformEndpoints.R
tests/testthat/testProcessors.R
tests/testthat/testTaxonEndpoints.R
tests/testthat/testValidators.R
vignettes/cheat_sheet.png
vignettes/gemma.R.Rmd
vignettes/metadata.Rmd
vignettes/metanalysis.Rmd
