processGenes: Processes JSON as a vector of genes

In PavlidisLab/Gemma-API: A wrapper for Gemma's Restful API to access curated gene expression data and differential expression analyses

Processes JSON as a vector of genes

Description

Processes JSON as a vector of genes

Usage

processGenes(d)

Arguments

d	The JSON to process

Value

A data table with information about the querried gene(s) A list if raw = TRUE.

The fields of the output data.table are:

• gene.symbol: Symbol for the gene

• gene.ensembl: Ensembl ID for the gene

• gene.NCBI: NCBI id for the gene

• gene.name: Name of the gene

• gene.aliases: Gene aliases. Each row includes a vector

• gene.MFX.rank: Multifunctionality rank for the gene

• taxon.name: Name of the species

• taxon.scientific: Scientific name for the taxon

• taxon.ID: Internal identifier given to the species by Gemma

• taxon.NCBI: NCBI ID of the taxon

• taxon.database.name: Underlying database used in Gemma for the taxon

• taxon.database.ID: ID of the underlying database used in Gemma for the taxon

PavlidisLab/Gemma-API documentation built on Dec. 15, 2024, 12:45 a.m.