n_expressoStudies: The list of studies included in the neuroexpresso database.

In PavlidisLab/neuroExpressoAnalysis: Marker genes of brain cell types and their use in analysis of whole tissue data

The list of studies included in the neuroexpresso database.

Description

The list of studies included in the neuroexpresso database. Includes studies that are not included in the gene selection and the neuroexpresso website for the sake of completion. These studies can be filtered out using ShinyNames or PyramidalDeep fields

Usage

n_expressoStudies

Format

• GSE: GSE identifier of the dataset

• samples: GSM identifiers or file names of the samples included

• MajorType: Does the study represent glial or neuronal cells

• Neurotransmitter: Grouping of studies based on neurotransmitter release

• ShinyNames: Cell type names used in the neuroexpresso.org

• PyramidalDeep: internal shorter cell type names for cell types used in the study

• Description: Description provided by the original authors

• Age: Average age of the samples. Adult denotes an uncertain adult mouse while negative numbers denote embryonic days

• Region: Brain regions that the samples were included in for the study

• Platform: Microarray platform that was used for the samples

• Reference: Source of the dataset

• PMID: PubMed id of the paper

• Normalize: Samples that are used when merging GPL339 and GPL1261 platform

• Normalize2: Samples that are used when using only GPL1261 platform

• Note: Notes about the quality of the sample or about the changes made on the naming or metadata

PavlidisLab/neuroExpressoAnalysis documentation built on Aug. 23, 2022, 7:42 a.m.