PeeperLab/CopywriteR: Copy number information from targeted sequencing using off-target reads
CopywriteR extracts DNA copy number information from targeted sequencing by utiizing off-target reads. It allows for extracting uniformly distributed copy number information, can be used without reference, and can be applied to sequencing data obtained from various techniques including chromatin immunoprecipitation and target enrichment on small gene panels. Thereby, CopywriteR constitutes a widely applicable alternative to available copy number detection tools.
Getting started
Browse package contents
Package details |
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| Author | Thomas Kuilman |
| Bioconductor views | CopyNumberVariation Coverage ExomeSeq Preprocessing TargetedResequencing Visualization |
| Maintainer | Thomas Kuilman <t.kuilman@nki.nl> |
| License | GPL-2 |
| Version | 2.0.6 |
| URL | https://github.com/PeeperLab/CopywriteR |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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