average_gene_scores: Summarize gene combinations by calculating the average lfc...
In PeterDeWeirdt/intactr: Detect Interactions from CRISPR Combinatorial Screens
View source: R/summary_stats.R
Description
Summarize gene combinations by calculating the average lfc for a combo and the
average lfc for each of gene on its own in a combo
Usage
1
average_gene_scores(lfc_df, n_guides = F, standardize = F)
Arguments
lfc_df
data frame with the columns 'gene1', 'gene2', 'guide1',
'guide2', 'control1', 'control2', ...
n_guides
how many guides are in each construct (for grouping controls)
standardize
whether to use controls to z-score log fold changes
PeterDeWeirdt/intactr documentation built on June 8, 2020, 1:52 p.m.
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View source: R/summary_stats.R
Description
Summarize gene combinations by calculating the average lfc for a combo and the average lfc for each of gene on its own in a combo
Usage
1 | average_gene_scores(lfc_df, n_guides = F, standardize = F)
|
Arguments
lfc_df |
data frame with the columns 'gene1', 'gene2', 'guide1', 'guide2', 'control1', 'control2', ... |
n_guides |
how many guides are in each construct (for grouping controls) |
standardize |
whether to use controls to z-score log fold changes |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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