calculate_anchor_residuals: Calculate genetic interaction scores by treating each guide...
In PeterDeWeirdt/intactr: Detect Interactions from CRISPR Combinatorial Screens
View source: R/anchor_residuals.R
Description
Calculate genetic interaction scores by treating each guide as an anchor
Usage
1
calculate_anchor_residuals(lfc_df, n_guides = FALSE, fit_controls = FALSE)
Arguments
lfc_df
data frame with the columns 'gene1', 'gene2', 'guide1',
'guide2', 'control1', 'control2', ...
n_guides
guides per gene if FALSE, then controls are not grouped into
pseudogenes
fit_controls
if TRUE only use controls to fit linear model
PeterDeWeirdt/intactr documentation built on June 8, 2020, 1:52 p.m.
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View source: R/anchor_residuals.R
Description
Calculate genetic interaction scores by treating each guide as an anchor
Usage
1 | calculate_anchor_residuals(lfc_df, n_guides = FALSE, fit_controls = FALSE)
|
Arguments
lfc_df |
data frame with the columns 'gene1', 'gene2', 'guide1', 'guide2', 'control1', 'control2', ... |
n_guides |
guides per gene if FALSE, then controls are not grouped into pseudogenes |
fit_controls |
if TRUE only use controls to fit linear model |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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