Description Usage Arguments Value References See Also Examples
This functions calls the PhiPack software and extracts the four summary statistics MaxChi, NSS and the mean and the variance of Phi.
1 |
seqName |
A character string containing the full path and the name of the sequence file in |
pathPhi |
A character string containing the path to PhiPack. This path and the installation of PhiPack is necessary for the computation of the package. |
out |
an optional character string: by default an empty string "". Can be set to any user-defined string in order to rename all output files used within |
rm |
an optional logical value: by default |
A vector is returned containing the four summary statistics MaxChi, NSS and the mean and the variance of Phi.
Bruen, T., Phillipe, H. and Bryant, D. 2006. A quick and robust statistical test to detect the presence of recombination. Genetics 172, 2665–2681.
LDJump
, vcfR_to_fasta
, get_smuce
1 2 | ## The function is currently defined as
##getPhi(seqName = seqName, pathPhi = pathPhi)
|
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