Files in PhanstielLab/BentoBox
Coordinate-Based Genomic Visualization Package for R
.Rbuildignore
.github/.gitignore
.github/workflows/check-bioc-devel.yml
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/RcppExports.R
R/annoDomains.R
R/annoGenomeLabel.R
R/annoHeatmapLegend.R
R/annoHighlight.R
R/annoPixels.R
R/annoSegments.R
R/annoText.R
R/annoXaxis.R
R/annoYaxis.R
R/annoZoomLines.R
R/assembly.R
R/assemblyFunctions.R
R/colorby.R
R/defaultPackages.R
R/genomes.R
R/getExons.R
R/hicFunctions.R
R/mapColors.R
R/pageCreate.R
R/pageGuideHide.R
R/pageGuideHorizontal.R
R/pageGuideShow.R
R/pageGuideVertical.R
R/pageLayout.R
R/pagePlotPlace.R
R/pagePlotRemove.R
R/parameterFunctions.R
R/pgEnv.R
R/pgParams.R
R/placementFunctions.R
R/plotBase.R
R/plotCircle.R
R/plotGG.R
R/plotGenes.R
R/plotGenomeLabel.R
R/plotHicRectangle.R
R/plotHicSquare.R
R/plotHicTriangle.R
R/plotIdeogram.R
R/plotLegend.R
R/plotManhattan.R
R/plotMultiSignal.R
R/plotPairs.R
R/plotPairsArches.R
R/plotPolygon.R
R/plotRanges.R
R/plotRaster.R
R/plotRect.R
R/plotSegments.R
R/plotSignal.R
R/plotText.R
R/plotTranscripts.R
R/plotgardener.R
R/readBigwig.R
R/readHic.R
R/readingFunctions.R
R/sysdata.rda
R/viewportFunctions.R
R/zzz.R
README.md
icons/plotCircle.png
icons/plotGenes.png
icons/plotGenomeLabel.png
icons/plotHicRectangle.png
icons/plotHicSquare.png
icons/plotHicTriangle.png
icons/plotIdeogram.png
icons/plotLegend.png
icons/plotManhattan.png
icons/plotPairs.png
icons/plotPairsArches.png
icons/plotPolygon.png
icons/plotRanges.png
icons/plotRect.png
icons/plotSegments.png
icons/plotSignal.png
icons/plotText.png
icons/plotTranscripts.png
icons/plotgardener.png
inst/CITATION
inst/extdata/proximanova-regitalic.otf
inst/extdata/proximanova-regular.otf
inst/extdata/proximanova-semibold.otf
inst/images/Rlogo.png
inst/images/pg-gnome-hole-shadow.png
inst/images/pg-wordmark.png
inst/script/fonts.R
man/annoDomains.Rd
man/annoGenomeLabel.Rd
man/annoHeatmapLegend.Rd
man/annoHighlight.Rd
man/annoPixels.Rd
man/annoSegments.Rd
man/annoText.Rd
man/annoXaxis.Rd
man/annoYaxis.Rd
man/annoZoomLines.Rd
man/assembly.Rd
man/c.Rd
man/calcSignalRange.Rd
man/colorby.Rd
man/defaultPackages.Rd
man/figures/homePage-1.png
man/figures/icon.png
man/figures/logo.png
man/figures/pg-hex-text.png
man/figures/pg-wordmark.png
man/genomes.Rd
man/mapColors.Rd
man/pageCreate.Rd
man/pageGuideHide.Rd
man/pageGuideHorizontal.Rd
man/pageGuideShow.Rd
man/pageGuideVertical.Rd
man/pageLayoutCol.Rd
man/pageLayoutRow.Rd
man/pagePlotPlace.Rd
man/pagePlotRemove.Rd
man/pgParams.Rd
man/plotCircle.Rd
man/plotGG.Rd
man/plotGenes.Rd
man/plotGenomeLabel.Rd
man/plotHicRectangle.Rd
man/plotHicSquare.Rd
man/plotHicTriangle.Rd
man/plotIdeogram.Rd
man/plotLegend.Rd
man/plotManhattan.Rd
man/plotMultiSignal.Rd
man/plotPairs.Rd
man/plotPairsArches.Rd
man/plotPolygon.Rd
man/plotRanges.Rd
man/plotRaster.Rd
man/plotRect.Rd
man/plotSegments.Rd
man/plotSignal.Rd
man/plotText.Rd
man/plotTranscripts.Rd
man/plotgardener.Rd
man/readBigwig.Rd
man/readHic.Rd
pkgdown/_pkgdown.yml
pkgdown/extra.css
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
src/.gitignore
src/RcppExports.cpp
src/checkRow.cpp
src/rebinBigwig.cpp
tests/testthat.R
tests/testthat/test-assemblyFunctions.R
tests/testthat/test-colorby.R
tests/testthat/test-hicFunctions.R
tests/testthat/test-parameterFunctions.R
tests/testthat/test-pgParams.R
tests/testthat/test-placementFunctions.R
tests/testthat/test-plotting.R
tests/testthat/test-readingFunctions.R
tests/testthat/test-signalFunctions.R
tests/testthat/test-viewports.R
vignettes/guides/aesthetics.Rmd
vignettes/guides/annotations.Rmd
vignettes/guides/bioconductor_integration.Rmd
vignettes/guides/ideograms_and_shapes.Rmd
vignettes/guides/incorporating_ggplots.Rmd
vignettes/guides/our_philosophy.Rmd
vignettes/guides/plotgardener_meta_functions.Rmd
vignettes/guides/plotgardener_page.Rmd
vignettes/guides/plotting_multiomic_data.Rmd
vignettes/guides/reading_data_for_plotgardener.Rmd
vignettes/introduction_to_plotgardener.Rmd
