GM12878_ChIP_CTCF_signal | R Documentation |
A dataset listing read depths across the genome resulting from CTCF ChIP-seq in the GM12878 cell line. Genomic coordinates fall within the region chr21:28000000-30300000 according to the hg19 genome build.
data("GM12878_ChIP_CTCF_signal")
a dataframe in BED format with a "score" column
The name of the chromosome on which the genome feature exists.
The starting position of the feature in the chromosome.
The ending position of the feature in the chromosome.
Score value of read depth.
Data from Michael Snyder, Stanford with accession number ENCFF312KXX was downloaded from the ENCODE portal https://www.encodeproject.org/.
ENCODE Project Consortium. An integrated encyclopedia of DNA elements in the human genome. Nature. 2012 Sep 6;489(7414):57-74. doi: 10.1038/nature11247. PMID: 22955616; PMCID: PMC3439153.
Davis CA, Hitz BC, Sloan CA, Chan ET, Davidson JM, Gabdank I, Hilton JA, Jain K, Baymuradov UK, Narayanan AK, Onate KC, Graham K, Miyasato SR, Dreszer TR, Strattan JS, Jolanki O, Tanaka FY, Cherry JM. The Encyclopedia of DNA elements (ENCODE): data portal update. Nucleic Acids Res. 2018 Jan 4;46(D1):D794-D801. doi: 10.1093/nar/gkx1081. PMID: 29126249; PMCID: PMC5753278.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.