hg19_insulin_GWAS: plotgardener example insulin GWAS data

In PhanstielLab/BentoBoxData: Datasets and test data files for the plotgardener package

plotgardener example insulin GWAS data

Description

A dataset representing GWAS data from a GWAS study of insulin response with coordinates based on the hg19 genome build.

Usage

data("hg19_insulin_GWAS")

Format

a dataframe with the following columns:

chrom

The name of the chromosome of the SNP.

pos

The basepair position of the SNP.

p

The p-value of the SNP.

snp

The rsID of the SNP.

LD

A simulated linkage disequilibrium score for the SNP.

Source

GWAS summary statistics were downloaded from LocusZoom http://locuszoom.org/.

References

Prokopenko I, Poon W, Mägi R, Prasad B R, Salehi SA, Almgren P, Osmark P, Bouatia-Naji N, Wierup N, Fall T, Stančáková A, Barker A, Lagou V, Osmond C, Xie W, Lahti J, Jackson AU, Cheng YC, Liu J, O'Connell JR, Blomstedt PA, Fadista J, Alkayyali S, Dayeh T, Ahlqvist E, Taneera J, Lecoeur C, Kumar A, Hansson O, Hansson K, Voight BF, Kang HM, Levy-Marchal C, Vatin V, Palotie A, Syvänen AC, Mari A, Weedon MN, Loos RJ, Ong KK, Nilsson P, Isomaa B, Tuomi T, Wareham NJ, Stumvoll M, Widen E, Lakka TA, Langenberg C, Tönjes A, Rauramaa R, Kuusisto J, Frayling TM, Froguel P, Walker M, Eriksson JG, Ling C, Kovacs P, Ingelsson E, McCarthy MI, Shuldiner AR, Silver KD, Laakso M, Groop L, Lyssenko V. A central role for GRB10 in regulation of islet function in man. PLoS Genet. 2014 Apr 3;10(4):e1004235. doi: 10.1371/journal.pgen.1004235. PMID: 24699409; PMCID: PMC3974640.

PhanstielLab/BentoBoxData documentation built on June 15, 2024, 10:38 p.m.