Files in PhanstielLab/Sushi
Tools for visualizing genomics data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/Sushi-internal.R
R/Sushi.R
R/SushiColors.R
R/addlegend.R
R/chromOffsets.R
R/convertstrandinfo.R
R/datasetsinfo.R
R/highlighthic.R
R/labelgenome.R
R/labelplot.R
R/maptocolors.R
R/maptolwd.R
R/opaque.R
R/plotBed.R
R/plotBedgraph.R
R/plotBedpe.R
R/plotGenes.R
R/plotHic.R
R/plotHic2.R
R/plotManhattan.R
R/sortChrom.R
R/zoombox.R
R/zoomsregion.R
R/zzz.R
README.md
Sushi.Rproj
data/Sushi_5C.bedpe.rda
data/Sushi_ChIAPET_pol2.bedpe.rda
data/Sushi_ChIPExo_CTCF.bedgraph.rda
data/Sushi_ChIPSeq_CTCF.bedgraph.rda
data/Sushi_ChIPSeq_pol2.bed.rda
data/Sushi_ChIPSeq_pol2.bedgraph.rda
data/Sushi_ChIPSeq_severalfactors.bed.rda
data/Sushi_DNaseI.bedgraph.rda
data/Sushi_GWAS.bed.rda
data/Sushi_HiC.matrix.rda
data/Sushi_RNASeq_K562.bedgraph.rda
data/Sushi_genes.bed.rda
data/Sushi_hg18_genome.rda
data/Sushi_transcripts.bed.rda
man/Sushi-package.Rd
man/SushiColors.Rd
man/Sushi_5C.bedpe.Rd
man/Sushi_ChIAPET_pol2.bedpe.Rd
man/Sushi_ChIPExo_CTCF.bedgraph.Rd
man/Sushi_ChIPSeq_CTCF.bedgraph.Rd
man/Sushi_ChIPSeq_pol2.bed.Rd
man/Sushi_ChIPSeq_pol2.bedgraph.Rd
man/Sushi_ChIPSeq_severalfactors.bed.Rd
man/Sushi_DNaseI.bedgraph.Rd
man/Sushi_GWAS.bed.Rd
man/Sushi_HiC.matrix.Rd
man/Sushi_RNASeq_K562.bedgraph.Rd
man/Sushi_genes.bed.Rd
man/Sushi_hg18_genome.Rd
man/Sushi_transcripts.bed.Rd
man/addlegend.Rd
man/chromOffsets.Rd
man/convertstrandinfo.Rd
man/highlighthic.Rd
man/labelgenome.Rd
man/labelplot.Rd
man/maptocolors.Rd
man/maptolwd.Rd
man/opaque.Rd
man/plotBed.Rd
man/plotBedgraph.Rd
man/plotBedpe.Rd
man/plotGenes.Rd
man/plotHic.Rd
man/plotHic2.Rd
man/plotManhattan.Rd
man/sortChrom.Rd
man/zoombox.Rd
man/zoomsregion.Rd
vignettes/Figure_1.pdf
vignettes/PaperFigure.R
vignettes/Sushi.Rnw
vignettes/Sushi.bib
vignettes/Sushi.pdf
