highlighthic: highlight loci on a HiC plot
In PhanstielLab/Sushi: Tools for visualizing genomics data

highlight loci on a HiC plot

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highlighthic(x, y, labeltype = "bin", flip = FALSE, diameter = 0.025,
  lwd = 1, resolution = NULL, plottype = "triangle", half = "above",
  ...)

`x`	bin or midpoint of one interacting loci
`y`	bin or midpoint of other interacting loci
`labeltype`	the units for x and y options are 'bin' or 'bp'
`flip`	TRUE/FALSE whether plot should be flipped over the x-axis
`diameter`	of circle as a fraction of the x-axis
`lwd`	The line width, a positive number, defaulting to 1.
`resolution`	the width in bp of each pixel
`plottype`	options are "triangle" or "square"
`half`	if plottype is set to "square" should the highlight be "above" or "below" the diagonal