highlighthic: highlight loci on a HiC plot

Description Usage Arguments

View source: R/highlighthic.R

Description

highlight loci on a HiC plot

Usage

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highlighthic(x, y, labeltype = "bin", flip = FALSE, diameter = 0.025,
  lwd = 1, resolution = NULL, plottype = "triangle", half = "above",
  ...)

Arguments

x

bin or midpoint of one interacting loci

y

bin or midpoint of other interacting loci

labeltype

the units for x and y options are 'bin' or 'bp'

flip

TRUE/FALSE whether plot should be flipped over the x-axis

diameter

of circle as a fraction of the x-axis

lwd

The line width, a positive number, defaulting to 1.

resolution

the width in bp of each pixel

plottype

options are "triangle" or "square"

half

if plottype is set to "square" should the highlight be "above" or "below" the diagonal


PhanstielLab/Sushi documentation built on Dec. 18, 2021, 7:40 a.m.