Man pages for PhanstielLab/Sushi
Tools for visualizing genomics data
| addlegend | adds a legend to a Sushi plot |
| chromOffsets | defines chromosome offsets for plotting multi chromosomal... |
| convertstrandinfo | Converts strand info to 1 / -1 |
| highlighthic | highlight loci on a HiC plot |
| labelgenome | Adds genome coordinates to the x-axis of a Sushi plot |
| labelplot | adds a letter and a title to a plot |
| maptocolors | maps numeric vector to color palette |
| maptolwd | maps numeric vector to line widths |
| opaque | makes colors transparent (or opaque) |
| plotBed | plots data stored in bed file format |
| plotBedgraph | plots data stored in bed file format |
| plotBedpe | plots data stored in bed file format |
| plotGenes | plots gene structure or transcript structures |
| plotHic | plots HiC interaction matrix |
| plotHic2 | plots HiC interaction matrix |
| plotManhattan | plots a Manhattan plot |
| sortChrom | sort chromosome files by chom name |
| Sushi_5C.bedpe | Sushi_5C.bedpe |
| Sushi_ChIAPET_pol2.bedpe | Sushi_ChIAPET_pol2.bedpe |
| Sushi_ChIPExo_CTCF.bedgraph | Sushi_ChIPExo_CTCF.bedgraph |
| Sushi_ChIPSeq_CTCF.bedgraph | Sushi_ChIPSeq_CTCF.bedgraph |
| Sushi_ChIPSeq_pol2.bed | Sushi_ChIPSeq_pol2.bed |
| Sushi_ChIPSeq_pol2.bedgraph | Sushi_ChIPSeq_pol2.bedgraph |
| Sushi_ChIPSeq_severalfactors.bed | Sushi_ChIPSeq_severalfactors.bed |
| SushiColors | Generates a Sushi color palette |
| Sushi_DNaseI.bedgraph | Sushi_DNaseI.bedgraph |
| Sushi_genes.bed | Sushi_genes.bed |
| Sushi_GWAS.bed | Sushi_GWAS.bed |
| Sushi_hg18_genome | Sushi_hg18_genome |
| Sushi_HiC.matrix | Sushi_HiC.matrix |
| Sushi-package | Sushi: Tools for visualizing genomics data |
| Sushi_RNASeq_K562.bedgraph | Sushi_RNASeq_K562.bedgraph |
| Sushi_transcripts.bed | Sushi_transcripts.bed |
| zoombox | Adds a zoom box to a plot |
| zoomsregion | Adds a zoom region to a plot |
