hotmap: plots hotmap
In PhanstielLab/Sushi2: blah

Description Usage Arguments Examples

plots hotmap

hotmap(ourmatrix, colors = colorRampPalette(c("deepskyblue2", "black",
  "gold"))(100), labrow = TRUE, labcol = TRUE, gaps = NULL,
  gapsize = 0.025, rowcolors = NULL, xlab.cex = 1, xlab.font = 1,
  selectylabs = c(), selectylabs.label = NULL, selectylabs.col = "black",
  selectylabs.linecol = "black", ylab.dist = 0.05, ylab.cex = 1,
  ylab.font = 1, radius = 0.01)

`ourmatrix`	matrix to biuld hotmap from
`colors`	colors to use for heatmap
`labrow`	boolean whether or not rows should be labeled
`labcol`	boolean whether or not rows should be labeled
`gaps`	vector of rows after which a gap should be inserted
`gapsize`	size of each gap as a fraction of the entire height of the hotmap
`rowcolors`	a matrix of colors to be plotted to the side of each row
`xlab.cex`	magnification level of x axis font
`xlab.font`	font type of x axis font
`selectylabs`	names of rows to be labeled on y axis
`selectylabs.label`	optional vector of labels for y axis labels
`selectylabs.col`	single color or vector of colors for y axis labels
`selectylabs.linecol`	single color or vector of colors for lines to y axis labels
`ylab.dist`	the distance (line) away from the y axis that labels whould be written
`ylab.cex`	magnification level of x axis font
`ylab.font`	font type of y axis font
`radius`	(if selectylabs is not empty)

data(SushiRNA)
colnames(SushiRNA) = c("0.0","0.5","1.0","1.5","2","4","6")
# first row colors
rowcolors = rep("black",nrow(SushiRNA))
rowcolors[1:750]  = "grey"
rowcolors[751:1315] = "firebrick2"
par(mar=c(3,5,2,2))
par(mgp=c(3,.05,0))
test = sample(rownames(SushiRNA),30)
hotmap(SushiRNA,labrow = F,gaps=c(750,1315),rowcolors=rowcolors,
       xlab.cex=0.6,ylab.cex=0.4,ylab.font=1,
       selectylabs = test,ylab.dist=0.05,radius = .01)

mtext(side=1,line=1.0,font=2,text="Time (h) after LPS/IFNg treatment",cex=.75)