consensusChangeECDF: Change in Area Under the ECDF
In PhilBoileau/neatmaps: Heatmaps for Multiple Network Data

consensusChangeECDF

R Documentation

Change in Area Under the ECDF

Description

consensusChangeECDF plots the relative change in area under empirical cumulative distribution function for consecutive consensus cluster matrices produced using the neatmap function.

Usage

consensusChangeECDF(neatmap_res)

Arguments

neatmap_res

Output from the neatmap function.

Value

A ggplot of the change in consecutive area under the ECDFs of the consensus cluster matrices.

Author(s)

Philippe Boileau, philippe_boileau@berkeley.edu

References

For more information on the consensus matrices, see Monti et al..

Examples

#' # create the data frame using the network, node and edge attributes
df <- netsDataFrame(network_attr_df,
                    node_attr_df,
                    edge_df)

# run the neatmap code on df
neat_res <- neatmap(df, scale_df = "ecdf", max_k = 3, reps = 100, 
                    xlab = "vars", ylab = "nets", xlab_cex = 1, ylab_cex = 1)
                    
# visualize the relative change in AU ECDF of consecutive consensus cluster 
# iterations
consensusChangeECDF(neat_res)

PhilBoileau/neatmaps documentation built on April 21, 2022, 3:54 a.m.