Files in PhilipBerg/PaiR
Imputation and Significance Analysis of Proteomics Data
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
PaiR.Rproj
R/calc_weights.R
R/check_id.R
R/check_target.R
R/extract_results.R
R/filter_outliers.R
R/fit_gamma_regressions.R
R/get_conditions.R
R/imputation.R
R/normalization.R
R/plot_MA.R
R/plot_gamma_regression.R
R/plot_norm_box.R
R/run_limma_and_lfc.R
R/run_pipeline.R
R/ups.R
R/utils-pipe.R
R/yeast.R
R/zzz.R
README.Rmd
README.md
data/ups.rda
data/yeast.rda
inst/REFERENCES.bib
man/Mean-Variance_Gamma_Regressions.Rd
man/calc_weights.Rd
man/extract_results.Rd
man/filter_outliers.Rd
man/pipe.Rd
man/plot_gamma_imputation.Rd
man/plot_gamma_precision.Rd
man/plot_gamma_regression.Rd
man/plot_ma.Rd
man/plot_norm_box.Rd
man/psrn.Rd
man/run_limma_and_lfc.Rd
man/run_pipeline.Rd
man/single_imputation.Rd
man/tmm.Rd
man/ups.Rd
man/yeast.Rd
tests/testthat.R
tests/testthat/test-tmm.R
vignettes/.gitignore
vignettes/pair-tutorial.Rmd
vignettes/pair-tutorial_files/figure-html/gam_ups-1.png
vignettes/pair-tutorial_files/figure-html/gam_yeast-1.png
vignettes/pair-tutorial_files/figure-html/norm_vis_ups-1.png
vignettes/pair-tutorial_files/figure-html/norm_vis_ups_ang-1.png
vignettes/pair-tutorial_files/figure-html/norm_vis_ups_sub-1.png
vignettes/pair-tutorial_files/figure-html/norm_vis_yeast-1.png
vignettes/pair-tutorial_files/figure-html/yeast_mult_ma-1.png
