ups: Spiked-in data set of peptides

In PhilipBerg/PaiR: Imputation and Significance Analysis of Proteomics Data

Spiked-in data set of peptides

Description

A dataset containing quantification of peptides with true positives peptides spiked-in from the Universal Proteomics Standard Set 1 (UPS1) at three different concentrations and true negatives from Chlamydomonas reinhardtii with the same concentration in all samples. For details see \insertCiteberg2019evaluation;textualpair and if you use this dataset please cite the same paper.

Usage

ups

Format

A data frame with 10599 rows and 13 variables:

identifier

id column for features, true positives contains UPS and true negatives contains Cre

fmol25_*

Technical replicates with true positives spiked-in from 25 fmol UPS1 peptides

fmol50_*

Technical replicates with true positives spiked-in from 50 fmol UPS1 peptides

fmol100_*

Technical replicates with true positives spiked-in from 100 fmol UPS1 peptides

Source

https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2619-6

References

\insertAllCited

PhilipBerg/PaiR documentation built on March 18, 2022, noon