Files in PiotrPython/exSTRa
Expanded STR algorithm: detecting expansions in Illumina sequencing data
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/CLASS_exstra_db.R
R/CLASS_exstra_score.R
R/DATA.R
R/GENERICS.R
R/TRASH.R
R/add_alpha_.R
R/filter_low_scores.R
R/filter_sex.R
R/loci_normal_expansion.R
R/rbind_score_list.R
R/read_exstra_db.R
R/read_exstra_db_ucsc.R
R/read_exstra_db_xlsx.R
R/read_score.R
R/suggested_exstra_pipeline.R
README.md
Read-and-delete-me
data/placeholder.R
exSTRa.Rproj
examples/exSTRa_score_analysis.R
inst/extdata/HiSeqXTen_WGS_PCR_2.txt
inst/extdata/exSTRa_pipeline_graph.gv
inst/extdata/repeat_expansion_disorders.txt
man/exSTRa.Rd
man/loci.Rd
man/suggested_exstra_pipeline.Rd
perl/README.html
perl/README.md
perl/main/generating_counts.sh
perl/main/run_strexpansion_score.sh
perl/t/STR_test.pl
perl/t/classify_bam_repeats.pl
perl/t/location_within_sequence.pl
perl/t/reads_from_SCA10_region.txt
perl/t/reads_of_SCA10_repeat.txt
perl/t/reads_of_SCA10_repeat.txt.inner.txt
perl/t/score_of_sequence.pl
perl/t/test_repeats.txt
perl/t/test_repeats_ref_qualloc.txt
perl/t/test_repeats_ref_qualloc_location.txt
perl/t/test_repeats_reference.txt
perl/t/test_repeats_reference_original.txt
perl/t/within_read.pl
tests/testthat.R
tests/testthat/test_rbind_score_list.R
tests/testthat/test_with_large_data.R
