ps: ZymoBIOMICS microbial community "phyloseq" object.
In PratheepaJ/BARBI: A Bayesian Approach to Contamination Removal in Molecular Microbial Studies
Description
Usage
Format
Source
Examples
Description
A 'phyloseq' class object with 195 taxa in 8 samples that are from seven rounds of six-fold dilutions (1:1 up to 1:279,936) from standard ZymoBIOMICS microbial community and 10 negative extraction controls.
Usage
1
Format
An object of class 'phyloseq'.
- SubjectID
IDs for each sample
- sampleID
IDs for each sample
- SampleType
A factor variable with two levels: Standard and Negative
- Names
Extended names of the sampleIDs
Source
Valdiation data for the BARBI method (manuscript is under review)
Examples
1
2
3
## Not run: sample_data(ps)
otu_table(ps)
## End(Not run)
PratheepaJ/BARBI documentation built on April 16, 2020, 11:51 a.m.
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Description Usage Format Source Examples
Description
A 'phyloseq' class object with 195 taxa in 8 samples that are from seven rounds of six-fold dilutions (1:1 up to 1:279,936) from standard ZymoBIOMICS microbial community and 10 negative extraction controls.
Usage
1 |
Format
An object of class 'phyloseq'.
- SubjectID
IDs for each sample
- sampleID
IDs for each sample
- SampleType
A factor variable with two levels: Standard and Negative
- Names
Extended names of the sampleIDs
Source
Valdiation data for the BARBI method (manuscript is under review)
Examples
1 2 3 | ## Not run: sample_data(ps)
otu_table(ps)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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