reproducibilityReceipt: Reproducibility receipt for Rmarkdown documents

In PredictiveEcology/pemisc: Miscellaneous Utilities Developed by the Predictive Ecology Group

Reproducibility receipt for Rmarkdown documents

Description

Insert git repository and R session info into Rmarkdown documents. Based on suggestions in a Twitter thread by Miles McBain (https://twitter.com/MilesMcBain/status/1263272935197782016?s=20).

Usage

reproducibilityReceipt(title = "Reproducibility receipt")

Arguments

title

Header title for the inserted details section.

Details

Add the following to your Rmd files:

----- <details closed> <summary> <span title='Click to Expand'> Reproducibility receipt </span> </summary> ```r $`Git repository` Local: development /home/achubaty/Documents/GitHub/PredictiveEcology/pemisc Remote: development @ origin (ssh://[e-mail]/PredictiveEcology/pemisc.git) Head: [e977ca0] 2022-09-13: fixing GHA website deploy $`External spatial libraries` GEOS GDAL proj.4 GDAL_with_GEOS USE_PROJ_H "3.9.1" "3.3.2" "7.2.1" "true" "true" PROJ "7.2.1" $`R session info` - Session info --------------------------------------------------------------- setting value version R version 4.2.1 (2022-06-23) os Ubuntu 20.04.5 LTS system x86_64, linux-gnu ui X11 language en_CA:en collate C ctype en_CA.UTF-8 tz America/Edmonton date 2022-09-12 pandoc 2.5 @ /usr/bin/pandoc - Packages ------------------------------------------------------------------- ! package * version date (UTC) lib source amc 0.2.1 2021-09-28 [1] Github (achubaty/amc@15c5229) base64enc 0.1-4 2021-06-18 [1] local bit 4.0.4 2020-08-04 [1] RSPM (R 4.2.0) bit64 4.0.5 2020-08-30 [1] RSPM (R 4.2.0) bitops 1.0-7 2021-04-24 [1] RSPM (R 4.2.0) blob 1.2.3 2022-04-10 [1] RSPM (R 4.2.0) cachem 1.0.6 2021-08-19 [1] RSPM (R 4.2.0) callr 3.7.2 2022-08-22 [1] RSPM class 7.3-20 2022-01-13 [4] CRAN (R 4.1.2) classInt 0.4-7 2022-06-10 [1] RSPM (R 4.2.0) cli 3.4.0 2022-09-08 [1] RSPM (R 4.2.0) clipr 0.8.0 2022-02-22 [1] RSPM (R 4.2.0) codetools 0.2-18 2020-11-04 [4] CRAN (R 4.0.3) commonmark 1.8.0 2022-03-09 [1] RSPM (R 4.2.0) crayon 1.5.1 2022-03-26 [1] RSPM (R 4.2.0) data.table 1.14.2 2021-09-27 [1] RSPM (R 4.2.0) DBI 1.1.3 2022-06-18 [1] RSPM (R 4.2.0) desc 1.4.2 2022-09-08 [1] RSPM (R 4.2.0) details 0.3.0 2022-03-27 [1] RSPM (R 4.2.0) devtools 2.4.4 2022-07-20 [1] RSPM (R 4.2.0) digest 0.6.29 2021-12-01 [1] RSPM (R 4.2.0) dismo 1.3-8 2022-07-18 [1] RSPM (R 4.2.0) dplyr 1.0.10 2022-09-01 [1] RSPM (R 4.2.0) e1071 1.7-11 2022-06-07 [1] RSPM (R 4.2.0) ellipsis 0.3.2 2021-04-29 [1] RSPM (R 4.2.0) evaluate 0.16 2022-08-09 [1] RSPM (R 4.2.0) fansi 1.0.3 2022-03-24 [1] RSPM (R 4.2.0) fasterize 1.0.3 2020-07-27 [1] RSPM (R 4.2.0) fastmap 1.1.0 2021-01-25 [1] RSPM (R 4.2.0) fpCompare 0.2.4 2022-08-15 [1] RSPM (R 4.2.0) fs 1.5.2 2021-12-08 [1] RSPM (R 4.2.0) generics 0.1.3 2022-07-05 [1] RSPM (R 4.2.0) git2r 0.30.1 2022-03-16 [1] RSPM (R 4.2.0) glue 1.6.2 2022-02-24 [1] RSPM (R 4.2.0) here 1.0.1 2020-12-13 [1] RSPM (R 4.2.0) htmltools 0.5.3 2022-07-18 [1] RSPM (R 4.2.0) htmlwidgets 1.5.4 2021-09-08 [1] RSPM (R 4.2.0) httpuv 1.6.5 2022-01-05 [1] RSPM (R 4.2.0) httr 1.4.4 2022-08-17 [1] RSPM (R 4.2.0) KernSmooth 2.23-20 2021-05-03 [4] CRAN (R 4.0.5) knitr 1.40 2022-08-24 [1] RSPM later 1.3.0 2021-08-18 [1] RSPM (R 4.2.0) lattice 0.20-45 2021-09-22 [4] CRAN (R 4.2.0) lifecycle 1.0.1 2021-09-24 [1] RSPM (R 4.2.0) lobstr 1.1.2 2022-06-22 [1] RSPM (R 4.2.0) magrittr 2.0.3 2022-03-30 [1] RSPM (R 4.2.0) memoise 2.0.1 2021-11-26 [1] RSPM (R 4.2.0) mime 0.12 2021-09-28 [1] RSPM (R 4.2.0) miniUI 0.1.1.1 2018-05-18 [1] RSPM (R 4.2.0) VP pemisc * 0.0.4 2022-09-09 [?] Github (PredictiveEcology/pemisc@bebe4ec) (on disk 0.0.3.9007) peutils 0.1.0 2021-06-01 [1] Github (PredictiveEcology/peutils@d40d97c) pillar 1.8.1 2022-08-19 [1] RSPM pkgbuild 1.3.1 2021-12-20 [1] RSPM (R 4.2.0) pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.2.0) pkgload 1.3.0 2022-06-27 [1] RSPM (R 4.2.0) png 0.1-8 2021-06-18 [1] local prettyunits 1.1.1 2020-01-24 [1] RSPM (R 4.2.0) processx 3.7.0 2022-07-07 [1] RSPM (R 4.2.0) profvis 0.3.7 2020-11-02 [1] RSPM (R 4.2.0) promises 1.2.0.1 2021-02-11 [1] RSPM (R 4.2.0) proxy 0.4-27 2022-06-09 [1] RSPM (R 4.2.0) ps 1.7.1 2022-06-18 [1] RSPM (R 4.2.0) purrr 0.3.4 2020-04-17 [1] RSPM (R 4.2.0) R6 2.5.1 2021-08-19 [1] RSPM (R 4.2.0) raster 3.5-29 2022-08-14 [1] CRAN (R 4.2.1) Rcpp 1.0.9 2022-07-08 [1] RSPM (R 4.2.0) RCurl 1.98-1.8 2022-07-30 [1] RSPM (R 4.2.0) remotes 2.4.2 2021-11-30 [1] RSPM (R 4.2.0) reproducible 1.2.10.9000 2022-09-09 [1] Github (PredictiveEcology/reproducible@d683a29) Require 0.1.1.9009 2022-09-09 [1] local rgdal 1.5-32 2022-05-09 [1] CRAN (R 4.2.0) rlang 1.0.5 2022-08-31 [1] RSPM (R 4.2.0) roxygen2 7.2.1 2022-07-18 [1] RSPM (R 4.2.0) rprojroot 2.0.3 2022-04-02 [1] RSPM (R 4.2.0) RSQLite 2.2.16 2022-08-17 [1] RSPM (R 4.2.0) rstudioapi 0.14 2022-08-22 [1] RSPM sessioninfo 1.2.2 2021-12-06 [1] RSPM (R 4.2.0) sf 1.0-8 2022-07-14 [1] CRAN (R 4.2.1) shiny 1.7.2 2022-07-19 [1] RSPM (R 4.2.0) sp 1.5-0 2022-06-05 [1] RSPM stringi 1.7.8 2022-07-11 [1] RSPM (R 4.2.0) stringr 1.4.1 2022-08-20 [1] RSPM terra 1.6-7 2022-08-07 [1] CRAN (R 4.2.1) tibble 3.1.8 2022-07-22 [1] RSPM (R 4.2.0) tidyselect 1.1.2 2022-02-21 [1] RSPM (R 4.2.0) units 0.8-0 2022-02-05 [1] RSPM (R 4.2.0) urlchecker 1.0.1 2021-11-30 [1] RSPM (R 4.2.0) usethis 2.1.6 2022-05-25 [1] RSPM (R 4.2.0) utf8 1.2.2 2021-07-24 [1] RSPM (R 4.2.0) vctrs 0.4.1 2022-04-13 [1] RSPM (R 4.2.0) withr 2.5.0 2022-03-03 [1] RSPM (R 4.2.0) xfun 0.32 2022-08-10 [1] RSPM (R 4.2.0) xml2 1.3.3 2021-11-30 [1] RSPM (R 4.2.0) xtable 1.8-4 2019-04-21 [1] RSPM (R 4.2.0) [1] /home/achubaty/R/x86_64-pc-linux-gnu-library/4.2 [2] /usr/local/lib/R/site-library [3] /usr/lib/R/site-library [4] /usr/lib/R/library V -- Loaded and on-disk version mismatch. P -- Loaded and on-disk path mismatch. ------------------------------------------------------------------------------ $Timestamp [1] "2022-09-12 23:47:22 MDT" ``` </details> <br>

PredictiveEcology/pemisc documentation built on Sept. 19, 2022, 7 p.m.