getPfms: Retrieve the motifs from the pfms slot

In PriceLab/TReNA: Fit transcriptional regulatory networks using gene expression, priors, machine learning

Retrieve the motifs from the pfms slot

Description

Given a MotifMatcher object, return the motifs, which are stored in the pfms slot.

Usage

## S4 method for signature 'MotifMatcher'
getPfms(obj)

Arguments

obj	An object of class MotifMatcher

Value

The list of motif matrices stored in the pfms slot.

Examples

# Return the default matrix of JASPAR motifs
library(MotifDb)
motifMatcher <- MotifMatcher(genomeName="hg38", pfms = as.list(query(MotifDb, "sapiens")))
motifs <- getPfms(motifMatcher)

PriceLab/TReNA documentation built on March 21, 2023, 1:57 p.m.