findCandidateTranscriptionFactorsByMotifInSequence: identify transcription factors (using orf names) with motif...
In PriceLab/TrenaProjectArabidopsisRoot: explore transporters in Arabidopsis roots
Description
uses the "Bioconductor motif matcher" aka Biostrings::matchPWM as wrapped by trena's MotifMatcher class
Usage
1
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3
## S4 method for signature 'TrenaProjectArabidopsisRoot'
findCandidateTranscriptionFactorsByMotifInSequence(obj,
tbl.regions, pwmMatchMinimumAsPercentage)
Arguments
obj
An object of class TrenaProject
tbl.regions
A data.frame with chrom, start and end columsn
pwmMatchMinimumAsPercentage
a long integer (eg, 95L) expression minimum match threshold percentage
PriceLab/TrenaProjectArabidopsisRoot documentation built on Oct. 30, 2019, 10:42 p.m.
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Description
uses the "Bioconductor motif matcher" aka Biostrings::matchPWM as wrapped by trena's MotifMatcher class
Usage
1 2 3 | ## S4 method for signature 'TrenaProjectArabidopsisRoot'
findCandidateTranscriptionFactorsByMotifInSequence(obj,
tbl.regions, pwmMatchMinimumAsPercentage)
|
Arguments
obj |
An object of class TrenaProject |
tbl.regions |
A data.frame with chrom, start and end columsn |
pwmMatchMinimumAsPercentage |
a long integer (eg, 95L) expression minimum match threshold percentage |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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