Files in PriceLab/TrenaProjectArabidopsisRoot
explore transporters in Arabidopsis roots
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/TrenaProjectArabidopsisRoot.R
README.md
explore/camille/anyNumberOfPredictors.R
explore/camille/mtcarsR.R
explore/camille/test_mtcarsR.R
explore/camille/tmp.txt
explore/dataFrameRowExpansion/paulsSuggestion/10by10rootTable.RData
explore/dataFrameRowExpansion/paulsSuggestion/OrganizingRootMatrix.R
explore/dataFrameRowExpansion/paulsSuggestion/rowExpansion.R
explore/dataFrameRowExpansion/paulsSuggestion/tbl.test.RData
explore/importRootExpressionData/OrganizeRootMatrixFinal.R
explore/importRootExpressionData/createAddFour.R
explore/importRootExpressionData/createTestMatrix.R
explore/importRootExpressionData/identifyMultiOrfNames.R
explore/importRootExpressionData/makefile
explore/importRootExpressionData/myBug.RData
explore/importRootExpressionData/test.tbl.RData
explore/importRootExpressionData/test_createTestMatrix.R
explore/linearModels/lm/lm-demo.R
explore/networks/v1/WBC19Model.small.RData
explore/networks/v1/WBC19ModelHighLow.1.RData
explore/networks/v1/WBC19expressionHL.R
explore/networks/v1/ahl20.regulators.txt
explore/networks/v1/highAndLowWBC19regulators.txt
explore/networks/v1/preferredLayout
explore/networks/v1/style.js
explore/networks/v1/testNetwork.mtx.RData
explore/networks/v1/testNetwork1.mtx.RData
explore/networks/v1/trenaModel.1.WBC19.R
explore/networks/v1/v1.R
explore/networks/v1/v1hl.R
explore/networks/v1/wbc19-aluru-highAndLow.R
explore/networks/v1/wbc19.regulators.root.txt
explore/networks/v1/wbc19.regulators.txt
explore/unitTestingTemplateFiles/demo.R
explore/unitTestingTemplateFiles/makefile
explore/unitTestingTemplateFiles/test_demo.R
inst/extdata/expression/highAndLowMtx.RData
inst/extdata/expression/munoz.zinc.18993x42.canonicalRowNames.RData
inst/extdata/expression/munoz.zinc.19121x42.orfRowNames.RData
inst/extdata/expression/munoz.zinc.21201x42.RData
inst/extdata/expression/notes.txt
inst/extdata/geneInfoTable_tair10.RData
inst/extdata/geneSets/GO-0003700-DNA-binding-transcription-factor-activity.txt
inst/extdata/geneSets/rootMetalTransport.txt
inst/extdata/misc/geneIdMap.RData
inst/extdata/misc/tbl.aliases.RData
inst/sgm/wbc19-aluru.R
inst/unitTests/test_TrenaProjectArabidopsisRoot.R
makefile
man/TrenaProjectArabidopsisRoot-class.Rd
man/canonicalizeName.Rd
man/findCandidateTranscriptionFactorsByMotifInSequence.Rd
man/getAllTranscriptionFactors.Rd
man/getGeneNames.Rd
notes/ISBCollaborationNotes-mentewab-062819.docx
notes/ISBCollaborationNotes-mentewab-062819.txt
notes/biologyTerms.pdf
notes/terminology.txt
prep/GSE65934/tbl.root.smallRData
prep/geneInfoTable/gtfToTable.R
prep/munoz-zinc/experimentalVariables.tsv
prep/munoz-zinc/explore.R
prep/munoz-zinc/mtx.zinc.21201x42.RData
prep/munoz-zinc/notes.txt
prep/tannenbaum/.Rhistory
prep/tannenbaum/GSM3484757_Root_ATAC_1_peaks.narrowPeak
prep/tannenbaum/GSM3484758_Root_ATAC_2_peaks.narrowPeak
prep/tannenbaum/GSM3484759_Root_ATAC_3_peaks.narrowPeak
prep/tannenbaum/geneTracks.R
prep/tannenbaum/wbc19.R
prep/tfs/getFromGeneOntology.R
