MultiMethodMotifMatcher: import trena import motifmatchr import universalmotif import...

In PriceLab/TrenaViz: TrenaViz

Description

provides unified access to a set of motif/DNA sequence matching algorithms

Usage

MultiMethodMotifMatcher(
  genome,
  motifMatrix,
  tbl.regions,
  sequenceMatchAlgorithm,
  matchThreshold,
  quiet = TRUE
)

Arguments

genome	A character string, one of the supported genome builds: hg38, mm10
motifMatrix	A position frequency matrix
sequenceMatchAlgorithm	A character string, either "Biostrings matchPWM" or "MOODS matchMotifs"
matchThreshold	numeric, between 0 and 1 (usually 0.7 or higher)
quiet	A logical indicating whether or not the Trena object should print output
regions	A data.frame with chrom, start, end columns

Value

An object of the MultiMethodMotifMatcher class

PriceLab/TrenaViz documentation built on May 8, 2020, 9:28 p.m.