Man pages for PriceLab/igvR
igvR: integrative genomics viewer

DataFrameAnnotationTrack-classConstructor for DataFrameAnnotationTrack
DataFrameQuantitativeTrack-classConstructor for DataFrameQuantitativeTrack
displayTrackdisplay the specified track in igv
enableMotifLogoPopupsturn mottif log popups on or off
GenomicAlignmentTrack-classConstructor for GenomicAlignmentTrack
getGenomicRegionObtain the chromosome and coordiates of the currently...
getSupportedGenomesGet the shorthand codes (eg, "hg38") for the genomes...
getTrackNamesGet the names of all the tracks currently displayed in igv
GRangesAnnotationTrack-classConstructor for GRangesAnnotationTrack
GRangesQuantitativeTrack-classConstructor for GRangesQuantitativeTrack
igvAnnotationTrack-classConstructor for igvAnnotationTrack
igvR-classCreate an igvR object
pingTest the connection between your R session and the webapp
QuantitativeTrack-classConstructor for QuantitativeTrack
removeTracksByNameRemove named tracks
saveToSVGGet entire igv browser image in svg
setGenomeSpecify the reference genome, currently limited to hg38,...
setTrackClickFunctionSet the visible region, by explicit chromLoc string, or by...
showGenomicRegionSet the visible region, by explicit chromLoc string, or by...
Track-classConstructor for Track
trackInfoGet basic info about a track: its type, file format, source...
trackSizeRetrieve the size of the QuantitativeTrack
trackSize-DataFrameAnnotationTrack-methodRetrieve the size of the DataFrameAnnotationTrack
trackSize-DataFrameQuantitativeTrack-methodRetrieve the size of the DataFrameQuantitativeTrack
trackSize-GenomicAlignmentTrack-methodRetrieve the size of the GenomicAlignmentTrack
trackSize-GRangesAnnotationTrack-methodRetrieve the size of the GRangesAnnotationTrack
trackSize-GRangesQuantitativeTrack-methodRetrieve the size of the GRangesQuantitativeTrack
trackSize-UCSCBedAnnotationTrack-methodRetrieve the size of theUCSCBedAnnotationTrack
trackSize-UCSCBedGraphQuantitativeTrack-methodRetrieve the size of the UCSCBedGraphQuantitativeTrack
trackSize-VariantTrack-methodRetrieve the size of the VariantTrack
UCSCBedAnnotationTrack-classConstructor for UCSCBedAnnotationTrack
UCSCBedGraphQuantitativeTrack-classConstructor for UCSCBedGraphQuantitativeTrack
VariantTrack-classConstructor for VariantTrack
PriceLab/igvR documentation built on Jan. 9, 2020, 11:56 a.m.