RemoteAlignmentTrack-class: Constructor for RemoteAlignmentTrack
In PriceLab/igvR: igvR: integrative genomics viewer

RemoteAlignmentTrack-class

R Documentation

Constructor for RemoteAlignmentTrack

RemoteAlignmentTrack creates an IGV track for remote bam files

RemoteAlignmentTrack(
  trackName,
  bamUrl,
  bamIndex = NULL,
  trackHeight = 50,
  visibilityWindow = 30000,
  color = "gray"
)

`trackName`	A character string, used as track label by igv, we recommend unique names per track.
`bamUrl`	The URL of a bam file
`bamIndex`	The URL of a bam index file. Defaults to <bamUrl>.bai
`trackHeight`	track height, typically in range 20 (for annotations) and up to 1000 (for large sample vcf files)
`visibilityWindow`	Maximum window size in base pairs for which indexed annotations or variants are displayed. Defaults: 1 MB for variants, whole chromosome for other track types.
`color`	A character string, either a reconized color ("red") or a hex string ("#FF8532")