PlotEnrichedPathways: Connect and parse UniProt information

In Proteomicslab57357/UniprotR: Retrieving Information of Proteins from Uniprot

Connect and parse UniProt information

Description

This function is used to generate a combined plot for the enriched pathways from KEGG and REACTOME

Usage

PlotEnrichedPathways(Accs,OS="hsapiens",p_value=0.05,Path=NULL,theme="aaas",w=w,h=h)

Arguments

Accs	Vector of UniProt Accession/s or genes
OS	organism name Example: human - 'hsapiens', mouse - 'mmusculus'
p_value	custom p-value threshold for significance, default = 0.05
Path	Path to save output plot
theme	optional parameter to generate specific theme for journals ex: "aaas", "nature", "lancet", "jama"
w	width of the generated plot
h	height of the generated plot

Author(s)

Mohmed Soudy [e-mail] and Ali Mostafa [e-mail]

Proteomicslab57357/UniprotR documentation built on Sept. 11, 2023, 8:56 p.m.