Files in Przemol/seqplots-release
An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps.
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS
R/MotifSetup-class.R
R/PlotSetArray-class.R
R/PlotSetList-class.R
R/PlotSetPair-class.R
R/deployServerInstance.R
R/generic_methods.R
R/getPlotSetArray.R
R/helper_functions.R
R/int_getSF.R
R/int_ggHeatmapPlotWrapper.R
R/int_heatmapPlotWrapper.R
R/int_imPlot2.R
R/int_plotMext.R
R/plotAverage.R
R/plotHeatmap.R
R/run.R
R/seqplots-package.R
R/zzz.R
README.md
SeqPlots_Rpackage.Rproj
inst/doc/QuickStart.R
inst/doc/QuickStart.Rmd
inst/doc/QuickStart.html
inst/doc/SeqPlotsGUI.R
inst/doc/SeqPlotsGUI.Rmd
inst/doc/SeqPlotsGUI.html
inst/extdata/GSM1208360_chrI_100Kb_q5_sample.bw
inst/extdata/GSM1208361_chrI_100Kb_PeakCalls.bed
inst/extdata/Transcripts_ce10_chrI_100Kb.bed
inst/extdata/precalc_plotset.Rdata
inst/seqplots/functions/LOCAL/mceval.R
inst/seqplots/functions/LOCAL/server_plotHeatmap.R
inst/seqplots/functions/LOCAL/server_plotLineplot.R
inst/seqplots/functions/doFileOperations.R
inst/seqplots/functions/mcCalcStart_calculations.R
inst/seqplots/functions/mcDoParallel_plotting.R
inst/seqplots/functions/renderHTMLgrid.R
inst/seqplots/global.R
inst/seqplots/server.R
inst/seqplots/server_config.R
inst/seqplots/ui.R
inst/seqplots/ui/DataTablesToolsSetup.js
inst/seqplots/ui/FataTablesColumnSetup.js
inst/seqplots/ui/FileManagementModal.R
inst/seqplots/ui/loadModal.html
inst/seqplots/www/color/arrow.gif
inst/seqplots/www/color/cross.gif
inst/seqplots/www/color/hs.png
inst/seqplots/www/color/hv.png
inst/seqplots/www/color/jscolor.js
inst/seqplots/www/css/DT_bootstrap.css
inst/seqplots/www/css/NewFont.woff
inst/seqplots/www/css/TableTools.css
inst/seqplots/www/css/font-awesome.min.css
inst/seqplots/www/css/images/back_disabled.png
inst/seqplots/www/css/images/back_enabled.png
inst/seqplots/www/css/images/back_enabled_hover.png
inst/seqplots/www/css/images/forward_disabled.png
inst/seqplots/www/css/images/forward_enabled.png
inst/seqplots/www/css/images/forward_enabled_hover.png
inst/seqplots/www/css/images/sort_asc.png
inst/seqplots/www/css/images/sort_asc_disabled.png
inst/seqplots/www/css/images/sort_both.png
inst/seqplots/www/css/images/sort_desc.png
inst/seqplots/www/css/images/sort_desc_disabled.png
inst/seqplots/www/css/mask2.png
inst/seqplots/www/css/style.css
inst/seqplots/www/font/FontAwesome.otf
inst/seqplots/www/font/fontawesome-webfont.eot
inst/seqplots/www/font/fontawesome-webfont.svg
inst/seqplots/www/font/fontawesome-webfont.ttf
inst/seqplots/www/font/fontawesome-webfont.woff
inst/seqplots/www/help/bootstrap.min.js
inst/seqplots/www/help/help.html
inst/seqplots/www/help/img/01_01.png
inst/seqplots/www/help/img/01_QuickStart/01_QuickStart_01.png
inst/seqplots/www/help/img/01_QuickStart/01_QuickStart_02.png
inst/seqplots/www/help/img/01_QuickStart/01_QuickStart_03.png
inst/seqplots/www/help/img/01_QuickStart/01_QuickStart_04.png
inst/seqplots/www/help/img/01_QuickStart/01_QuickStart_05.png
inst/seqplots/www/help/img/01_QuickStart/01_QuickStart_06.png
inst/seqplots/www/help/img/01_QuickStart/01_QuickStart_07.png
inst/seqplots/www/help/img/01_QuickStart/01_QuickStart_08.png
inst/seqplots/www/help/img/01_QuickStart/01_QuickStart_09.png
inst/seqplots/www/help/img/01_QuickStart/01_QuickStart_10.png
inst/seqplots/www/help/img/01_QuickStart/01_QuickStart_11.png
inst/seqplots/www/help/img/01_QuickStart/01_QuickStart_12.png
inst/seqplots/www/help/img/03_01.png
inst/seqplots/www/help/img/03_02.png
inst/seqplots/www/help/img/03_03.png
inst/seqplots/www/help/img/03_04.png
inst/seqplots/www/help/img/05_01.png
inst/seqplots/www/help/img/05_02.png
inst/seqplots/www/help/img/05_03.png
inst/seqplots/www/help/img/05_04.png
inst/seqplots/www/help/img/06/06_01.png
inst/seqplots/www/help/img/06/06_02.png
inst/seqplots/www/help/img/06/06_03.png
inst/seqplots/www/help/img/06/06_04.png
inst/seqplots/www/help/img/07_01.png
inst/seqplots/www/help/img/07_02.png
inst/seqplots/www/help/img/07_03.png
inst/seqplots/www/help/img/07_04.png
inst/seqplots/www/help/img/07_05.png
inst/seqplots/www/help/img/07_05_06.png
inst/seqplots/www/help/img/07_06.png
inst/seqplots/www/help/img/08_01.png
inst/seqplots/www/help/img/08_02.png
inst/seqplots/www/help/img/08_03.png
inst/seqplots/www/help/img/08_04.png
inst/seqplots/www/help/img/08_05.png
inst/seqplots/www/help/img/09_01.png
inst/seqplots/www/help/img/09_02.png
inst/seqplots/www/help/img/09_03.png
inst/seqplots/www/help/img/09_04.png
inst/seqplots/www/help/img/10_00.png
inst/seqplots/www/help/img/10_01.png
inst/seqplots/www/help/img/ico.png
inst/seqplots/www/help/img/ico_noax.png
inst/seqplots/www/help/img/icos.png
inst/seqplots/www/help/jquery-ui.min.js
inst/seqplots/www/help/jquery.min.js
inst/seqplots/www/help/jquery.tocify.min.js
inst/seqplots/www/help/marked.min.js
inst/seqplots/www/help/prettify.min.js
inst/seqplots/www/help/strapdown.css
inst/seqplots/www/help/strapdown.js
inst/seqplots/www/help/themes/LICENSE
inst/seqplots/www/help/themes/README.md
inst/seqplots/www/help/themes/amelia.min.css
inst/seqplots/www/help/themes/bootstrap-responsive.min.css
inst/seqplots/www/help/themes/bootstrap.min.css
inst/seqplots/www/help/themes/cerulean.min.css
inst/seqplots/www/help/themes/cyborg.min.css
inst/seqplots/www/help/themes/journal.min.css
inst/seqplots/www/help/themes/readable.min.css
inst/seqplots/www/help/themes/simplex.min.css
inst/seqplots/www/help/themes/slate.min.css
inst/seqplots/www/help/themes/spacelab.min.css
inst/seqplots/www/help/themes/spruce.min.css
inst/seqplots/www/help/themes/superhero.min.css
inst/seqplots/www/help/themes/united.min.css
inst/seqplots/www/js/DataTables/DT_bootstrap.js
inst/seqplots/www/js/DataTables/DT_filter.js
inst/seqplots/www/js/DataTables/dataTables.tableTools.min.js
inst/seqplots/www/js/DataTables/jquery.dataTables.js
inst/seqplots/www/js/actionbutton.js
inst/seqplots/www/js/afterHTMLgridrender.js
inst/seqplots/www/js/color.js
inst/seqplots/www/js/jquery.ba-throttle-debounce.js
inst/seqplots/www/js/jquery.cookie.js
inst/seqplots/www/js/jquery.lettering.js
inst/seqplots/www/js/js_addons.js
inst/seqplots/www/js/load_finished.js
inst/seqplots/www/js/modal_events.js
inst/seqplots/www/js/tmpl.min.js
inst/seqplots/www/upload/css/jquery.fileupload-ui-noscript.css
inst/seqplots/www/upload/css/jquery.fileupload-ui.css
inst/seqplots/www/upload/css/style.css
inst/seqplots/www/upload/img/loading.gif
inst/seqplots/www/upload/img/progressbar.gif
inst/seqplots/www/upload/js/cors/jquery.postmessage-transport.js
inst/seqplots/www/upload/js/cors/jquery.xdr-transport.js
inst/seqplots/www/upload/js/jquery.fileupload-fp.js
inst/seqplots/www/upload/js/jquery.fileupload-ui.js
inst/seqplots/www/upload/js/jquery.fileupload-validate.js
inst/seqplots/www/upload/js/jquery.fileupload.js
inst/seqplots/www/upload/js/jquery.iframe-transport.js
inst/seqplots/www/upload/js/main.js
inst/seqplots/www/upload/js/md5.js
inst/seqplots/www/upload/js/vendor/jquery.ui.widget.js
inst/seqplots/www/upload/upload.html
man/MotifSetup-class.Rd
man/PlotSetArray-class.Rd
man/PlotSetList-class.Rd
man/PlotSetPair-class.Rd
man/deployServerInstance.Rd
man/getPlotSetArray.Rd
man/ggHeatmapPlotWrapper.Rd
man/heatmapPlotWrapper.Rd
man/imPlot2.Rd
man/num2bp.Rd
man/num2sci.Rd
man/plot.Rd
man/plotAverage.Rd
man/plotHeatmap.Rd
man/plotMext.Rd
man/run.Rd
man/seqplots-generic.Rd
man/seqplots.Rd
tests/test-all.R
tests/testthat/test1.R
tests/testthat/testGUI.R
vignettes/QuickStart.Rmd
vignettes/SeqPlotsGUI.Rmd
