Files in PublicHealthEngland/hcaidcs
R functions for the mandatory surveillance of bacteraemia and C. difficile infection

.Rbuildignore

.gitignore

.travis.yml

DESCRIPTION

NAMESPACE

NEWS.md R/aec_age_sex_plot.R R/aec_age_trends_plots.R R/aec_create_folder_structure.R R/aec_ec_primary_focus_plot.R R/aec_inpatient.R R/aec_subregion_plot.R R/aec_tto_plot.R R/age_sex_pyramid.R R/ann_tab_ccg_names.R R/ann_tab_long.R R/ann_tab_onset.R R/ann_tab_pir_org_type.R R/apportion.R R/apportion_phc_date.R R/apportion_prior_healthcare.R R/area_team_names.R R/assignment_algorithm.R R/bed_days_fq.R R/bed_days_fy.R R/change.R R/cmonth_to_fmonth.R R/cq_long.R R/cyear_to_cq.R R/cyear_to_fyear.R R/data.R R/date_end_period.R R/date_start_period.R R/date_to_cmonth.R R/date_to_fmonth.R R/date_to_fq.R R/date_to_fyear.R R/days_in_cyear.R R/days_in_fmonth.R R/days_in_fq.R R/days_in_fy.R R/dcs_denom_boilerplate.R R/dcs_specialty_grouping.R R/detach_hcaidcs.R R/factor_apportioned.R R/first_wednesday.R R/fq5.R R/fq_long.R R/fq_short.R R/fq_to_cq.R R/fq_to_fyear.R R/fy_long.R R/fy_long_short.R R/fy_short.R R/fy_six.R R/fyear_to_cyear.R R/fyear_to_fq.R R/graph_age_groups.R R/graph_species_names.R R/group_source_bacteraemia.R R/group_tto_bacteraemia.R R/group_tto_cdi.R R/independent_sector_denominator.R R/inpatient.R R/is_sch.R R/is_third_party.R R/kh03_boilerplate.R R/kh03_year.R R/klebsiella_sp_group.R R/mandatory_age.R R/mandatory_age_group.R R/mandatory_age_group_bacteraemia.R R/mandatory_age_group_cdi.R R/mf_create_text_values.R R/mf_fig1_fun.R R/mf_lag_trend.R R/mo_curr_months.R R/mo_gnabsi_table.R R/mo_next_pub_date.R R/mo_prior_hc_table.R R/mo_pub_date.R R/mo_std_table.R R/mo_tab_long.R R/month_to_string.R R/mrsa_source_bacteraemia.R R/ordered_fin_qtr.R R/ordered_m_y.R R/patloc_for_pir_assignment.R R/pir_org_type.R R/popn_boilerplate.R R/provis_orgname.R R/qec_age_table.R R/show_hcaidcs_package_manual.R R/time_period2fyear.R R/time_to_onset.R R/up_or_down.R R/update_orgs_dcs.R R/zzz.R README.Rmd README.md

_pkgdown.yml

codecov.yml

data-raw/area_team_geo_prep.R data-raw/geo_prep.R data-raw/prep_age_trends.R data-raw/prep_assignment_data.R data-raw/prep_line_listing.R data-raw/prep_mf_trend_data.R data-raw/prep_monthly_ccg_data_raw.R

data/age_trends_data.rda

data/assignment_data.rda

data/assignment_data2.rda

data/at_sp_df.RData

data/at_sp_df.rda

data/cdi_prior_hc_data.rda

data/line_listing.rda

data/mf_trend_data.rda

data/monthly_ccg_data_raw.rda

data/subregion_test_data.rda

data/subregions_sp_df.rda

docs/404.html

docs/CODE_OF_CONDUCT.html

docs/CONTRIBUTING.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/docsearch.json

docs/index.html

docs/jquery.sticky-kit.min.js

docs/link.svg

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/proxy1.png

docs/reference/aec_age_sex_plot.html

docs/reference/aec_age_trend_pc-1.png

docs/reference/aec_age_trend_pc.html

docs/reference/aec_age_trend_rate-1.png

docs/reference/aec_age_trend_rate.html

docs/reference/aec_age_trend_rate_bar-1.png

docs/reference/aec_age_trend_rate_bar.html

docs/reference/aec_age_trend_rate_pc_change-1.png

docs/reference/aec_age_trend_rate_pc_change.html

docs/reference/aec_create_folder_structure.html

docs/reference/aec_ec_source_plot.html

docs/reference/aec_inpatient.html

docs/reference/aec_subregion_plot-1.png

docs/reference/aec_subregion_plot.html

docs/reference/aec_tto_plot.html

docs/reference/age_sex_pyramid-1.png

docs/reference/age_sex_pyramid.html

docs/reference/age_trends_data.html

docs/reference/ann_tab_ccg_names.html

docs/reference/ann_tab_long.html

docs/reference/ann_tab_onset_annual.html

docs/reference/ann_tab_onset_qtrly.html

docs/reference/ann_tab_pir_org_type.html

docs/reference/ann_tab_pir_quarterly.html

docs/reference/apportion.html

docs/reference/apportion_phc_date.html

docs/reference/apportion_prior_healthcare.html

docs/reference/area_team_names.html

docs/reference/assignment_algorithm.html

docs/reference/assignment_data.html

docs/reference/assignment_data2.html

docs/reference/at_sp_df.html

docs/reference/bed_days_fq.html

docs/reference/bed_days_fy.html

docs/reference/cal_q_long.html

docs/reference/cdi_prior_hc_data.html

docs/reference/change.html

docs/reference/check_date_class.html

docs/reference/cmonth_to_fmonth.html

docs/reference/cmonth_to_string.html

docs/reference/collapse_select.html

docs/reference/convert_csv2R.html

docs/reference/convert_csv2RCCG.html

docs/reference/convert_csv2RTrust.html

docs/reference/cyear_to_cq.html

docs/reference/cyear_to_fyear.html

docs/reference/data_compare.html

docs/reference/date_end_period.html

docs/reference/date_start_period.html

docs/reference/date_to_cmonth.html

docs/reference/date_to_fmonth.html

docs/reference/date_to_fq.html

docs/reference/date_to_fyear.html

docs/reference/days_in_cy.html

docs/reference/days_in_fmonth.html

docs/reference/days_in_fq.html

docs/reference/days_in_fy.html

docs/reference/dcs_cols_lookup.html

docs/reference/dcs_popn_boilerplate.html

docs/reference/dcs_speciality_grouping.html

docs/reference/detach_hcaidcs.html

docs/reference/ecoli_primary_focus.html

docs/reference/factor_apportion_both.html

docs/reference/factor_apportioned.html

docs/reference/factor_prior_hc.html

docs/reference/first_wednesday.html

docs/reference/fmonth_to_string.html

docs/reference/fq5.html

docs/reference/fq_long.html

docs/reference/fq_short.html

docs/reference/fq_short_to_date.html

docs/reference/fq_to_cq.html

docs/reference/fq_to_fyear.html

docs/reference/fy_long.html

docs/reference/fy_long_short.html

docs/reference/fy_short.html

docs/reference/fy_six.html

docs/reference/fy_six_to_long.html

docs/reference/fyear_to_cyear.html

docs/reference/fyear_to_fq.html

docs/reference/fyq_to_fq.html

docs/reference/graph_age_groups.html

docs/reference/graph_species_names.html

docs/reference/group_source_bacteraemia.html

docs/reference/group_tto_bacteraemia.html

docs/reference/group_tto_cdi.html

docs/reference/highlight.html

docs/reference/independent_sector_denominator.html

docs/reference/index.html

docs/reference/inpatient.html

docs/reference/is_sch.html

docs/reference/is_third_party.html

docs/reference/kh03_boilerplate.html

docs/reference/kh03_year.html

docs/reference/klebsiella_sp_group.html

docs/reference/line_listing.html

docs/reference/mandatory_age.html

docs/reference/mandatory_age_group.html

docs/reference/mandatory_age_group_bacteraemia.html

docs/reference/mandatory_age_group_cdi.html

docs/reference/merge_all.html

docs/reference/merge_everything.html

docs/reference/merge_one.html

docs/reference/mf_create_text_values.html

docs/reference/mf_fig1_fun-1.png

docs/reference/mf_fig1_fun-2.png

docs/reference/mf_fig1_fun-3.png

docs/reference/mf_fig1_fun-4.png

docs/reference/mf_fig1_fun.html

docs/reference/mf_lag_trend.html

docs/reference/mf_trend_data.html

docs/reference/mo_curr_months.html

docs/reference/mo_gnabsi_table.html

docs/reference/mo_next_pub_date.html

docs/reference/mo_prior_hc_table.html

docs/reference/mo_pub_date.html

docs/reference/mo_std_table.html

docs/reference/mo_tab_long.html

docs/reference/monthly_ccg_data_raw.html

docs/reference/mrsa_source_bacteraemia.html

docs/reference/ordered_fin_qtr.html

docs/reference/ordered_m_y.html

docs/reference/organism_labeller.html

docs/reference/patloc_for_pir_assignment.html

docs/reference/pir_org_type.html

docs/reference/popn_boilerplate.html

docs/reference/provis_orgname.html

docs/reference/qec_age_table.html

docs/reference/query_dcs.html

docs/reference/show_hcaidcs_package_manual.html

docs/reference/subregion_test_data.html

docs/reference/subregions_sp_df.html

docs/reference/time_period2fyear.html

docs/reference/time_to_onset.html

docs/reference/up_or_down.html

docs/reference/update_independent.html

docs/sitemap.xml

hcaidcs.Rproj

inst/test-merge_everything_NON_MRSA_new.xlsx

inst/test_convertcsv2rCCG.csv

inst/test_convertcsv2rTrust.csv

PublicHealthEngland/hcaidcs documentation built on Jan. 19, 2024, 8:38 a.m.

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PublicHealthEngland/hcaidcs
R functions for the mandatory surveillance of bacteraemia and C. difficile infection

Files in PublicHealthEngland/hcaidcs
R functions for the mandatory surveillance of bacteraemia and C. difficile infection

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PublicHealthEngland/hcaidcs R functions for the mandatory surveillance of bacteraemia and C. difficile infection

Files in PublicHealthEngland/hcaidcs R functions for the mandatory surveillance of bacteraemia and C. difficile infection

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PublicHealthEngland/hcaidcs
R functions for the mandatory surveillance of bacteraemia and C. difficile infection

Files in PublicHealthEngland/hcaidcs
R functions for the mandatory surveillance of bacteraemia and C. difficile infection