phyIC: independent contrasts calculation
In PuttickMacroevolution/cladeMode: nested modes of evolution
Description
Usage
Arguments
Value
Examples
Description
calculates independent contrasts and returns the IC of trait values, ancestral state estimates, phylogenetic mean, rate of BM evolution, root variance, the rescaled phylogeny and the log-likelihood
Usage
1
phyIC(phy, yDat)
Arguments
phy
dated tree in ape format
yDat
named vector of trait values
Value
list of parameters
Examples
1
2
3
4
5
set.seed(30)
# simulate tree with 20 species
simTree <- rcoal(20)
simData <- cladeModeSim(n=1, phy=simTree, mode="BM")
phyIC(simTree, simData)
PuttickMacroevolution/cladeMode documentation built on May 8, 2019, 3:47 a.m.
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Description Usage Arguments Value Examples
Description
calculates independent contrasts and returns the IC of trait values, ancestral state estimates, phylogenetic mean, rate of BM evolution, root variance, the rescaled phylogeny and the log-likelihood
Usage
1 | phyIC(phy, yDat)
|
Arguments
phy |
dated tree in ape format |
yDat |
named vector of trait values |
Value
list of parameters
Examples
1 2 3 4 5 | set.seed(30)
# simulate tree with 20 species
simTree <- rcoal(20)
simData <- cladeModeSim(n=1, phy=simTree, mode="BM")
phyIC(simTree, simData)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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