Description Usage Arguments Value Examples
View source: R/all_functions.R
Visualize summary statistics for interactions based on total sum of -loglikelihoods for each variant across all interactions og the sum of effect sizes.
1 | pseudo_manhattan(tped,correlations,values="p")
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tped |
Input tped file as .tped file or data frame. The tped file (.tped) is a transposed ped file, from Plink. This file contains the SNP and genotype information where one row is a SNP. The first 4 columns of a TPED file are the same as a 4-column MAP file. Then all genotypes are listed for all individuals for each particular SNP on each line. Again, SNPs are 1,2-coded.#' |
correlations |
List of epistatic correlations and p-values generated by epistatic.correlation() |
values |
Values can either be p or for p-values or c for coefficients depending on if you wan't to use the effects sizes for p-values for plotting |
Plots a pseudo manhattan plot
1 | pseudo_manhattan(tped,correlations)
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