iqtcatClust: A three step Clustering Algorithm correlation distance

Description Usage Arguments

Description

Dendrogram for big data.

Usage

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iqtcatClust(snp, iInx, k, identicals = TRUE, maxNeigbours = 100,
  nLocal = 10, method = "complete", mc.cores = 1, trace = FALSE,
  ...)

Arguments

snp

A object of class snpMatrix.

iInx

...

k

positive integer specifying the number of clusters, less than the number of observations.

identicals

lgical, if zero clustering ...

maxNeigbours

positive integer specifying the maximum number of randomized searches.

nLocal

positive integer specifying the number of optimisation runs. Columns have to be similar to snp.

method

see hclust

mc.cores

number of cores for parallel computing. See mclapply in package parallel for details.

trace

...

...

...


QTCAT/iqtcat documentation built on May 8, 2019, 3:48 a.m.