normalPheno: Simulates a normal distributed phenotype with effects either...

In QTCAT/qtcat.data: Quantitative Trait Cluster Association Test Dataset

Description

Simulates a normal distributed phenotype with effects either normal or gamma distributed.

Usage

normalPheno(snp, n.rep = 1, n.loci = 50, h2 = 0.5, snp.probs = NULL,
  eff.dist = c("gaussian", "gamma"), shape = 0.5)

Arguments

snp	An object of S4 class snpMatrix.
n.rep	Number of replication per individual. For the replication no effects at the phenotype are simulated.
n.loci	Number of loci with effect at the phenotype.
h2	Trait heritability.
snp.probs	A vector of probabilities for each SNP to be selected as a causal loci.
eff.dist	Distribution from which the effects are drown.
shape	See rgamma (only considered if 'eff.dist = gamma').

QTCAT/qtcat.data documentation built on April 20, 2021, 11:20 p.m.