NeigRepresent | R Documentation |

Calculate the neighbor representation of cells to the low-dimensional gene expression matrix

NeigRepresent( drData, NN.method = "KNN", Dis.method = "Euclidean", LSH.TreeNum = 30, LSH.Dim = 500, LSH.Dis = "angular", neiRatio = 0.65 )

`drData` |
gene expression matrix after dimensionality reduced by PCA |

`NN.method` |
the method of finding neighbors |

`Dis.method` |
the distance metric in finding neighbors |

`LSH.TreeNum` |
the tree number of LSH |

`LSH.Dim` |
the dimension in LSH |

`LSH.Dis` |
the distance metric in LSH |

`neiRatio` |
ratio of the number of selected |

the similarity matrix measured by neighbor representation NR

gfData <- GenesFilter(yan) res_SimS <- SimS(gfData) NeigRepresent(res_SimS$drData)

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