RCSL: Perform the RCSL program

In QinglinMei/RCSL: Rank Constrained Similarity Learning for single cell RNA sequencing data

Perform the RCSL program

Description

Perform the RCSL program

Usage

RCSL(
  data,
  GF = TRUE,
  gfRatio = 0.025,
  pcRatio = 0.95,
  NN.method = "KNN",
  Dis.method = "Euclidean",
  neiRatio = 0.65
)

Arguments

data	normalizaed gene expression matrix(each column represents a cell)
GF	should I need the gene filter step?
gfRatio	the ratio of the gene filter
pcRatio	the ratio between the variance of the
NN.method	the method of finding neighbors
Dis.method	the distance metric in finding neighbors
neiRatio	ratio of the number of selected

Value

gfData gene expression matrix after genes filtering

B block-diagonal matrix

C estimated number of clusters

y clustering results

Examples

data(yan)
data <- log2(yan+1)
RCSL(yan[,1:20])

QinglinMei/RCSL documentation built on Feb. 16, 2024, 2:31 a.m.