RCSL | R Documentation |

Perform the RCSL program

RCSL( data, GF = TRUE, gfRatio = 0.025, pcRatio = 0.95, NN.method = "KNN", Dis.method = "Euclidean", neiRatio = 0.65 )

`data` |
normalizaed gene expression matrix(each column represents a cell) |

`GF` |
should I need the gene filter step? |

`gfRatio` |
the ratio of the gene filter |

`pcRatio` |
the ratio between the variance of the |

`NN.method` |
the method of finding neighbors |

`Dis.method` |
the distance metric in finding neighbors |

`neiRatio` |
ratio of the number of selected |

gfData gene expression matrix after genes filtering

B block-diagonal matrix

C estimated number of clusters

y clustering results

data(yan) data <- log2(yan+1) RCSL(yan[,1:20])

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