qstats: Compute quantile statistics

In QuackenbushLab/yarn: YARN: Robust Multi-Condition RNA-Seq Preprocessing and Normalization

Compute quantile statistics

Description

This function was directly borrowed from github user kokrah.

Usage

qstats(exprs, groups, window)

Arguments

exprs	for counts use log2(raw counts + 1)), for MA use log2(raw intensities)
groups	groups to which samples belong (character vector)
window	window size for running median as a fraction on the number of rows of exprs

Value

list of statistics

Source

Kwame Okrah's qsmooth R package Compute quantile statistics

QuackenbushLab/yarn documentation built on March 7, 2024, 3:53 p.m.