Man pages for Quantmetrics770/IQnca
Noncompartmental Analysis in R
| AUC_IQnca | AUC calculation |
| aux_explode | Splits a string based on a separator substring |
| aux_explodePC | Splits strings by separator only if separators not in... |
| aux_fileparts | aux_fileparts function |
| aux_fileread | aux_fileread function |
| aux_filewrite | aux_filewrite function |
| aux_getOS | Determine the operating system |
| aux_mkdir | aux_mkdir function |
| aux_plotlayout | Determine layout for distribution single plots to rows,... |
| aux_postFillChar | Postpad string with char to defined length |
| aux_preFillChar | Prepad string with char to defined length |
| aux_rmdir | aux_rmdir function |
| aux_simplifypath | Remove unnecessary dot-dot from (relative) paths. |
| aux_splitVectorEqualPieces | Split vector into equal pieces |
| aux_strrep | Replaces some string in a string |
| aux_strtrim | Trims a strings leading and trailing white spaces |
| aux_version | Check version function for packages |
| check_IQdataNCA | Check IQdataNCA |
| clusterX | Cluster Data in Blocks of Similar x Values and Summarize y... |
| compareIQRWNL_IQnca | Simple pragmatic comparison function for IQnca and Winnonlin... |
| createPages_IQRoutputFigure | Create pages from IQRoutputFigure |
| dataSpec_IQdataNCA | Show NCA data specification and display as a table |
| date2dateday_IQRdataProgramming | Conversion of date/time in string format to day in string... |
| date2datetime_IQRdataProgramming | Conversion of date/time in string format to time in string... |
| date2time_IQRdataProgramming | Conversion of date/time in string format to numeric values |
| doc_IQnca | Open IQnca documentation in browser |
| examples_IQnca | Install examples to allow running examples from the book |
| exportADNCA_IQdataNCA | Export an IQdataNCA object to an ADNCA dataset |
| exportCDISC_IQnca | Export an IQnca object to CDISC PP and ADPP |
| export_IQdataNCA | Export an IQdataNCA object |
| export_IQnca | Export an IQnca object |
| export_IQRrmd | Export IQRrmd object to an rmd file |
| figures_indiv_IQdataNCA | Generate individual PK concentration figures for reporting |
| figure_spaghetti_dosenorm_IQdataNCA | Plot dose-normalized summary spaghetti plots of IQdataNCA... |
| figure_spaghetti_IQdataNCA | Plot summary spaghetti plots of IQdataNCA objects... |
| figure_summary_geomean_IQdataNCA | Plot of summary PK concentrations (geometric mean and 95% CI) |
| figure_summary_geommean_dosenorm_IQdataNCA | Plot of summary dose-normalized PK concentrations (geometric... |
| figure_summary_mean_dosenorm_IQdataNCA | Plot of summary dose-normalized PK concentrations (arithmetic... |
| figure_summary_mean_IQdataNCA | Plot of summary PK concentrations (arithmetic mean and SD) |
| geocv | geometric CV auxiliary |
| geomean | geometric mean auxiliary |
| geom_uperrorbar | geom_uperrorbar ... nice to have |
| GeomUperrorbar | Needed for geom_uperrorbar |
| geosd | geometric sd auxiliary |
| getaddcovcolumns_IQdataNCA | Get additional (undefined potential covariate) columns for... |
| getColumnNames_IQdataNCA | Get information on the type of columns and their names for an... |
| getLabels_dataframe | Extract label information of columns in data.frames |
| getTIMEUNITname_IQdataNCA | Get name of time unit in IQdataNCA object |
| getTIMEUNITsymbol_IQdataNCA | Get symbol of time unit in IQdataNCA object |
| grapes-II-grapes | Needed for geom_uperrorbar |
| has_IQReport_executable | Check if IQReport is installed and available |
| ignoreNCA_IQdataNCA | Define records to be excluded from NCA PK parameter... |
| ignorerecord_IQdataNCA | Define records to be ignored with reason why |
| ignoresubject_IQdataNCA | Define subjects to be ignored for analyses with reason why |
| ignoreSUM_IQdataNCA | Define records to be excluded from summary and inferential... |
| install_MIDDmodule | Installs defined webinar module from the web |
| install_workshop | Installs workshop material |
| intervalAUC_NCA | Define interval AUC calculation |
| IQdataNCA | Create an IQdataNCA object |
| IQncaColors | Color table for IQnca |
| IQReport | Interface to the IQReport command line interface tool |
| IQRggplot | ggplot functionality implementing IQnca style |
| IQRinitCompliance | Initializes the compliance mode |
| IQRloadCSVdata | Simple auxiliary to load a CSV dataset |
| IQRloadSASdata | Loading SAS data |
| IQRoutputCSV | Exporting a data.frame as CSV file |
| IQRoutputFigure | Create IQRoutputFigure object and/or print graph object to... |
| IQRoutputFile | Exporting a text file with added compliance information log... |
| IQRoutputPDF | Printing ggplot object or list of objects to a PDF file with... |
| IQRoutputPDFend | Ends export to PDF (deprecated) |
| IQRoutputPDFstart | Start export to PDF (deprecated) |
| IQRoutputPNG | Printing a single ggplot object to png file with added... |
| IQRoutputRDS | Exporting an R object to RDS format with added compliance... |
| IQRoutputTable | Convert dataframe to IQRoutputTable object and allow export |
| IQRoutputValueTable | Exporting a value with label and potential description for... |
| IQRoutputXPT | Export general data.frame object as XPT file |
| IQRsaveCSVdata | Simple auxiliary to save a CSV dataset with attributes |
| is_enabled_complianceMode | Checks if the compliance mode is enabled |
| is_enabled_rdsMode | Checks if the rds mode is enabled |
| is_IQdataNCA | Check if object is an IQdataNCA object |
| is_IQnca | Check if object is an IQnca object |
| listing_concdetailed_IQdataNCA | Generate a detailed listing of individual pharmacokinetic... |
| listing_conc_IQdataNCA | Generate a simple listing of individual pharmacokinetic... |
| listing_ignoredSubjectsRecords_IQdataNCA | Listing of ignored subjects and records |
| listing_pkparameter_IQnca | Generate a listing of calculated PK parameters |
| listing_timedetailed_IQdataNCA | Generate a listing of individual pharmacokinetic... |
| listing_time_IQdataNCA | Generate a listing of individual pharmacokinetic... |
| load_IQdataNCA | Load an IQdataNCA object from CSV |
| loadSetupOptions_IQnca | Loading IQnca setup options |
| nca_IQdataNCA | Calculation of NCA PK parameters |
| opt.layout | Convenience function for setting additional page layout... |
| opt.pagesize | Convenience function for setting additional page printing... |
| ordercol_IQdataNCA | Order an IQdataNCA objects columns in standard way |
| pcorres2aconc_IQdataNCA | Convert typical PCORRES column in PC domain to AVALUE col in... |
| plot.IQdataNCA | Generic plot function for IQdataNCA objects |
| plot.IQRoutputFigure | Plot function for IQRoutputFigure (calls print) |
| plus-.IQRrmd | Concatenate IQRrmd objects |
| printGrid | Plotting a list of ggplot objects in a grid defined by nrow... |
| print.IQdataNCA | Generic print function for IQdataNCA objects |
| print.IQnca | Generic print function for IQnca objects |
| print.IQRoutputFigure | Print IQRoutputFigure to pages (ggplot objects) |
| print.IQRoutputFigureList | Prints summary for the IQRoutputFigures contained in the list |
| print.IQRoutputTable | Overloading "print" for IQRoutputTable objects |
| print.IQRrmd | Overloading "print" for IQRrmd objects |
| reliabilityTable_IQnca | Determine reliability of the NCA results from IQnca object |
| removeCommata_dataframe | Remove commata in elements in data.frame |
| reportIgnoredSUMNCA_IQdataNCA | Report ignored records from summary tables and/or NCA... |
| report_IQnca | Generate default NCA report |
| rmdAPPROVALS | Add an approvals page to the report (after title) |
| rmdCOMMENT | Generate RMD command to include a Word comment |
| rmdEMPTY | Create empty IQRrmd object |
| rmdFIGref | Figure Cross reference |
| rmdFIGURE | Generate RMD command to include a figure from a file |
| rmdLANDSCAPE | Switch to Landscape mode |
| rmdLINEBREAK | Add a simple line break |
| rmdNEWPAGE | Generate newpage RMD command |
| rmdNOINTRO | Do not include TOC/TOF/TOT in DOCX report |
| rmdPARAGRAPH | Start a new paragraph |
| rmdPDF | Generate RMD command to include a PDF from a file |
| rmdPORTRAIT | Switch to Portrait mode |
| rmdSECref | Section Cross reference |
| rmdSECTION | Generate Section RMD command |
| rmdTABLE | Generate RMD command to include a table from a file |
| rmdTABLEDF | Generate RMD command to include a table from a dataframe |
| rmdTABref | Table Cross reference |
| rmdTEXTSTYLE | Change the size, color, and/or style of a text piece |
| rmdTITLE | Generate title RMD command |
| rmdTXT | Generate RMD command to include a text from a file |
| rmdTXTref | Text Cross reference |
| rmdURL | Generate RMD command to include a URL |
| rmdVALref | Value Table cross reference |
| scale_color_IQnca | Color table for IQnca |
| scale_fill_IQnca | Color table for IQnca |
| scale_y_log10_IQnca | Log scale for x or y axis with proper grid lines |
| setup_IQnca | Opening the setup_options_IQnca.R file for editing |
| slope_IQdataNCA | Slope calculation function for IQdataNCA objects |
| slope_manual_NCA | Define slope points in subjects to be used for manual slope... |
| slopetest_IQnca | Calculation of R2 and R2ADJ for slope of profile |
| statXYnominal | Summary stats per time point (no clustering) |
| stopIQR | Replacement for stop function to be used in IQnca |
| summary.IQdataNCA | Generic summary function for IQdataNCA objects |
| summary.IQRoutputFigure | Summary function for IQRoutputFigure |
| support | Open support webpage |
| table_summary_acrossGROUP_pkparameters_IQnca | Generate a summary table for PK parameters (across dose... |
| table_summary_byGROUP_pkparameters_IQnca | Generate a summary table for PK parameters (by dose group) |
| table_summary_conc_by_time_IQdataNCA | Generate another table of statistical summaries of... |
| table_summary_conc_IQdataNCA | Generate a table of statistical summaries of pharmacokinetic... |
| text_IQRoutputTable | Convert IQRoutputTable to text representation |
| themeIQnca | IQ NCA's standard theme |
| unlabel_dataframe | Remove labelled class and label |
| warningIQR | Replacement for warning function to be used in IQnca |
