topn_plot: Top 'N' Plot

In RC-88/CaDrA: Candidate Driver Analysis

Top 'N' Plot

Description

Generate a heatmap representation of overlapping meta-features across top N feature searches using candidate_search() function

Usage

topn_plot(topn_list)

Arguments

topn_list

a list of objects returned from candidate_search() using simulated dataset FS = sim_FS, input_score = sim_Scores, top_N = 7, method = "ks_pval", alternative = "less", search_method = "both", max_size = 10, and best_score_only = FALSE as inputs to the function. The resulting list contains a set of meta-features in form of SummarizedExperiment object, a vector of observed input scores, and its corresponding best score over top N feature searches

Value

a heatmap of overlapping meta-features for a given top N feature searches

Examples

# Load pre-computed Top-N list generated for sim_FS dataset
data(topn_list)

# Get the overlapping top N plot
topn_plot(topn_list = topn_list)

RC-88/CaDrA documentation built on March 28, 2023, 12:18 a.m.