API for RGLab/ImmuneSignatures2
Pre-Processing for HIPC ImmuneSignatures2 Analysis
| Global functions | |
|---|---|
| addAnalysisVariables | Man page Source code |
| addArmAccession | Man page Source code |
| addCoalescedFeatureSetName | Man page Source code |
| addDemographicFields | Man page Source code |
| addFeatureAnnotationSetName | Man page Source code |
| addFeatureAnnotationSetVendor | Man page Source code |
| addGSMAccessions | Man page Source code |
| addGeBatchName | Man page Source code |
| addIrpBatchName | Man page Source code |
| addMatrixRelatedFields | Man page Source code |
| addResponseData | Man page Source code |
| addSDY1325metadata | Man page Source code |
| addStudy | Man page Source code |
| addTimePostLastVax | Man page Source code |
| addVaccineFields | Man page Source code |
| ageGroups | Man page |
| all_genesets | Man page |
| batchCorrect | Man page Source code |
| batchCorrect.importedModel | Man page Source code |
| checkFinalTestResults | Man page Source code |
| correctHrs | Man page Source code |
| createUniqueIdColumn | Man page Source code |
| crossStudyNormalize | Man page Source code |
| customProcessing | Man page Source code |
| expectedGeMetaDataColumns | Man page |
| filterEsetByAge | Man page Source code |
| filterImmdataByAge | Man page Source code |
| filterOutNoVaccineSamples | Man page Source code |
| generateELISAResponse | Man page Source code |
| generateNAbHAIresponse | Man page Source code |
| generateResponseCall | Man page Source code |
| getImmuneResponseData | Man page Source code |
| getLmFitValues | Man page Source code |
| getModelFormula | Man page Source code |
| getTable | Man page Source code |
| imputeAge | Man page Source code |
| imputeYchrom.useAllTimepoints | Man page Source code |
| performTiterAnalysis | Man page Source code |
| preProcessImmData | Man page Source code |
| qualityControl.createSubjectsByStudyTable | Man page |
| qualityControl.failedYchromQC | Man page |
| qualityControl.genderByMatrix | Man page |
| qualityControl.samplePlot | Man page Source code |
| qualityControl.yChromPresentByMatrix | Man page Source code |
| relevelEsets | Man page Source code |
| removeAllNArows | Man page Source code |
| removeSDY212MissingSample | Man page Source code |
| removeTimepointFromEset | Man page Source code |
| runAllAnalyses | Man page Source code |
| sdy1325_metadata | Man page |
| sdy1370_elisa | Man page |
| selectResponsesToUse | Man page Source code |
| subsetToOnlyNeededColumns | Man page Source code |
| summarizeByGeneSymbol | Man page Source code |
| testAllGEMatrixPreNorm | Man page Source code |
| testAllGEMetaDataPreNorm | Man page Source code |
| testExtractedGEData | Man page Source code |
| testFinalEset | Man page Source code |
| testGEMetaDataPreSummarization | Man page Source code |
| testImmuneResponseData | Man page Source code |
| testNoNormEset | Man page Source code |
| updateStudyTimepoints | Man page Source code |
| vaccines | Man page |
| write_data_metadata | Man page Source code |
| write_processing_metadata | Man page Source code |
| yChromGenes | Man page |
