qualityControl.samplePlot: Generate sample MDS plots for QC
In RGLab/ImmuneSignatures2: Pre-Processing for HIPC ImmuneSignatures2 Analysis
View source: R/qualityControl.R
qualityControl.samplePlot R Documentation
Generate sample MDS plots for QC
Description
Generate sample MDS plots for QC
Usage
qualityControl.samplePlot(
eset,
method = "MDS",
numberOfSamples = 10,
colorCol = "study_accession"
)
Arguments
eset
expressionSet
method
MDS or PCA
numberOfSamples
number of samples to use per study
colorCol
field name to use for labeling samples in plot
RGLab/ImmuneSignatures2 documentation built on Dec. 9, 2022, 10:51 a.m.
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View source: R/qualityControl.R
| qualityControl.samplePlot | R Documentation |
Generate sample MDS plots for QC
Description
Generate sample MDS plots for QC
Usage
qualityControl.samplePlot( eset, method = "MDS", numberOfSamples = 10, colorCol = "study_accession" )
Arguments
eset |
expressionSet |
method |
MDS or PCA |
numberOfSamples |
number of samples to use per study |
colorCol |
field name to use for labeling samples in plot |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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