.Rbuildignore
          
        
          
            
            .gitignore
          
        
          
            
            DESCRIPTION
          
        
          
            
            NAMESPACE
          
        
          
            
            R/AllClasses.R
          
        
          
            
            R/AllFunctions.R
          
        
          
            
            R/AllMethods.R
          
        
          
            
            R/ReadFunctions.R
          
        
          
            
            R/imports.R
          
        
          
            
            README.md
          
        
          
            
            inst/DES_backup
          
        
          
            
            inst/NS_backup
          
        
          
            
            inst/doc/LumiR-geom-sc.pdf
          
        
          
            
            inst/doc/LumiR-plot-layout-fig.pdf
          
        
          
            
            inst/doc/LumiR.pdf
          
        
          
            
            inst/doc/raw_data_BioPlex.pdf
          
        
          
            
            inst/doc/raw_data_MasterPlex.pdf
          
        
          
            
            inst/doc/raw_data_xPONENT.pdf
          
        
          
            
            inst/extdata/analyte.csv
          
        
          
            
            inst/extdata/layout.csv
          
        
          
            
            inst/extdata/plate1/Run001.csv
          
        
          
            
            inst/extdata/plate1/Run002.csv
          
        
          
            
            inst/extdata/plate1/Run003.csv
          
        
          
            
            inst/extdata/plate1/Run004.csv
          
        
          
            
            inst/extdata/plate1/Run005.csv
          
        
          
            
            inst/extdata/plate1/Run006.csv
          
        
          
            
            inst/extdata/plate1/Run007.csv
          
        
          
            
            inst/extdata/plate1/Run008.csv
          
        
          
            
            inst/extdata/plate1/Run009.csv
          
        
          
            
            inst/extdata/plate1/Run010.csv
          
        
          
            
            inst/extdata/plate1/Run011.csv
          
        
          
            
            inst/extdata/plate1/Run012.csv
          
        
          
            
            inst/extdata/plate1/Run013.csv
          
        
          
            
            inst/extdata/plate1/Run014.csv
          
        
          
            
            inst/extdata/plate1/Run015.csv
          
        
          
            
            inst/extdata/plate1/Run016.csv
          
        
          
            
            inst/extdata/plate1/Run017.csv
          
        
          
            
            inst/extdata/plate1/Run018.csv
          
        
          
            
            inst/extdata/plate1/Run019.csv
          
        
          
            
            inst/extdata/plate1/Run020.csv
          
        
          
            
            inst/extdata/plate1/Run021.csv
          
        
          
            
            inst/extdata/plate1/Run022.csv
          
        
          
            
            inst/extdata/plate1/Run023.csv
          
        
          
            
            inst/extdata/plate1/Run024.csv
          
        
          
            
            inst/extdata/plate1/Run025.csv
          
        
          
            
            inst/extdata/plate1/Run026.csv
          
        
          
            
            inst/extdata/plate1/Run027.csv
          
        
          
            
            inst/extdata/plate1/Run028.csv
          
        
          
            
            inst/extdata/plate1/Run029.csv
          
        
          
            
            inst/extdata/plate1/Run030.csv
          
        
          
            
            inst/extdata/plate1/Run031.csv
          
        
          
            
            inst/extdata/plate1/Run032.csv
          
        
          
            
            inst/extdata/plate1/Run033.csv
          
        
          
            
            inst/extdata/plate1/Run034.csv
          
        
          
            
            inst/extdata/plate1/Run035.csv
          
        
          
            
            inst/extdata/plate1/Run036.csv
          
        
          
            
            inst/extdata/plate1/Run037.csv
          
        
          
            
            inst/extdata/plate1/Run038.csv
          
        
          
            
            inst/extdata/plate1/Run039.csv
          
        
          
            
            inst/extdata/plate1/Run040.csv
          
        
          
            
            inst/extdata/plate1/Run041.csv
          
        
          
            
            inst/extdata/plate1/Run042.csv
          
        
          
            
            inst/extdata/plate1/Run043.csv
          
        
          
            
            inst/extdata/plate1/Run044.csv
          
        
          
            
            inst/extdata/plate1/Run045.csv
          
        
          
            
            inst/extdata/plate1/Run046.csv
          
        
          
            
            inst/extdata/plate1/Run047.csv
          
        
          
            
            inst/extdata/plate1/Run048.csv
          
        
          
            
            inst/extdata/plate1/Run049.csv
          
        
          
            
            inst/extdata/plate1/Run050.csv
          
        
          
            
            inst/extdata/plate1/Run051.csv
          
        
          
            
            inst/extdata/plate1/Run052.csv
          
        
          
            
            inst/extdata/plate1/Run053.csv
          
        
          
            
            inst/extdata/plate1/Run054.csv
          
        
          
            
            inst/extdata/plate1/Run055.csv
          
        
          
            
            inst/extdata/plate1/Run056.csv
          
        
          
            
            inst/extdata/plate1/Run057.csv
          
        
          
            
            inst/extdata/plate1/Run058.csv
          
        
          
            
            inst/extdata/plate1/Run059.csv
          
        
          
            
            inst/extdata/plate1/Run060.csv
          
        
          
            
            inst/extdata/plate1/Run061.csv
          
        
          
            
            inst/extdata/plate1/Run062.csv
          
        
          
            
            inst/extdata/plate1/Run063.csv
          
        
          
            
            inst/extdata/plate1/Run064.csv
          
        
          
            
            inst/extdata/plate1/Run065.csv
          
        
          
            
            inst/extdata/plate1/Run066.csv
          
        
          
            
            inst/extdata/plate1/Run067.csv
          
        
          
            
            inst/extdata/plate1/Run068.csv
          
        
          
            
            inst/extdata/plate1/Run069.csv
          
        
          
            
            inst/extdata/plate1/Run070.csv
          
        
          
            
            inst/extdata/plate1/Run071.csv
          
        
          
            
            inst/extdata/plate1/Run072.csv
          
        
          
            
            inst/extdata/plate1/Run073.csv
          
        
          
            
            inst/extdata/plate1/Run074.csv
          
        
          
            
            inst/extdata/plate1/Run075.csv
          
        
          
            
            inst/extdata/plate1/Run076.csv
          
        
          
            
            inst/extdata/plate1/Run077.csv
          
        
          
            
            inst/extdata/plate1/Run078.csv
          
        
          
            
            inst/extdata/plate1/Run079.csv
          
        
          
            
            inst/extdata/plate1/Run080.csv
          
        
          
            
            inst/extdata/plate1/Run081.csv
          
        
          
            
            inst/extdata/plate1/Run082.csv
          
        
          
            
            inst/extdata/plate1/Run083.csv
          
        
          
            
            inst/extdata/plate1/Run084.csv
          
        
          
            
            inst/extdata/plate1/Run085.csv
          
        
          
            
            inst/extdata/plate1/Run086.csv
          
        
          
            
            inst/extdata/plate1/Run087.csv
          
        
          
            
            inst/extdata/plate1/Run088.csv
          
        
          
            
            inst/extdata/plate2/Run001.csv
          
        
          
            
            inst/extdata/plate2/Run002.csv
          
        
          
            
            inst/extdata/plate2/Run003.csv
          
        
          
            
            inst/extdata/plate2/Run004.csv
          
        
          
            
            inst/extdata/plate2/Run005.csv
          
        
          
            
            inst/extdata/plate2/Run006.csv
          
        
          
            
            inst/extdata/plate2/Run007.csv
          
        
          
            
            inst/extdata/plate2/Run008.csv
          
        
          
            
            inst/extdata/plate2/Run009.csv
          
        
          
            
            inst/extdata/plate2/Run010.csv
          
        
          
            
            inst/extdata/plate2/Run011.csv
          
        
          
            
            inst/extdata/plate2/Run012.csv
          
        
          
            
            inst/extdata/plate2/Run013.csv
          
        
          
            
            inst/extdata/plate2/Run014.csv
          
        
          
            
            inst/extdata/plate2/Run015.csv
          
        
          
            
            inst/extdata/plate2/Run016.csv
          
        
          
            
            inst/extdata/plate2/Run017.csv
          
        
          
            
            inst/extdata/plate2/Run018.csv
          
        
          
            
            inst/extdata/plate2/Run019.csv
          
        
          
            
            inst/extdata/plate2/Run020.csv
          
        
          
            
            inst/extdata/plate2/Run021.csv
          
        
          
            
            inst/extdata/plate2/Run022.csv
          
        
          
            
            inst/extdata/plate2/Run023.csv
          
        
          
            
            inst/extdata/plate2/Run024.csv
          
        
          
            
            inst/extdata/plate2/Run025.csv
          
        
          
            
            inst/extdata/plate2/Run026.csv
          
        
          
            
            inst/extdata/plate2/Run027.csv
          
        
          
            
            inst/extdata/plate2/Run028.csv
          
        
          
            
            inst/extdata/plate2/Run029.csv
          
        
          
            
            inst/extdata/plate2/Run030.csv
          
        
          
            
            inst/extdata/plate2/Run031.csv
          
        
          
            
            inst/extdata/plate2/Run032.csv
          
        
          
            
            inst/extdata/plate2/Run033.csv
          
        
          
            
            inst/extdata/plate2/Run034.csv
          
        
          
            
            inst/extdata/plate2/Run035.csv
          
        
          
            
            inst/extdata/plate2/Run036.csv
          
        
          
            
            inst/extdata/plate2/Run037.csv
          
        
          
            
            inst/extdata/plate2/Run038.csv
          
        
          
            
            inst/extdata/plate2/Run039.csv
          
        
          
            
            inst/extdata/plate2/Run040.csv
          
        
          
            
            inst/extdata/plate2/Run041.csv
          
        
          
            
            inst/extdata/plate2/Run042.csv
          
        
          
            
            inst/extdata/plate2/Run043.csv
          
        
          
            
            inst/extdata/plate2/Run044.csv
          
        
          
            
            inst/extdata/plate2/Run045.csv
          
        
          
            
            inst/extdata/plate2/Run046.csv
          
        
          
            
            inst/extdata/plate2/Run047.csv
          
        
          
            
            inst/extdata/plate2/Run048.csv
          
        
          
            
            inst/extdata/plate2/Run049.csv
          
        
          
            
            inst/extdata/plate2/Run050.csv
          
        
          
            
            inst/extdata/plate2/Run051.csv
          
        
          
            
            inst/extdata/plate2/Run052.csv
          
        
          
            
            inst/extdata/plate2/Run053.csv
          
        
          
            
            inst/extdata/plate2/Run054.csv
          
        
          
            
            inst/extdata/plate2/Run055.csv
          
        
          
            
            inst/extdata/plate2/Run056.csv
          
        
          
            
            inst/extdata/plate2/Run057.csv
          
        
          
            
            inst/extdata/plate2/Run058.csv
          
        
          
            
            inst/extdata/plate2/Run059.csv
          
        
          
            
            inst/extdata/plate2/Run060.csv
          
        
          
            
            inst/extdata/plate2/Run061.csv
          
        
          
            
            inst/extdata/plate2/Run062.csv
          
        
          
            
            inst/extdata/plate2/Run063.csv
          
        
          
            
            inst/extdata/plate2/Run064.csv
          
        
          
            
            inst/extdata/plate2/Run065.csv
          
        
          
            
            inst/extdata/plate2/Run066.csv
          
        
          
            
            inst/extdata/plate2/Run067.csv
          
        
          
            
            inst/extdata/plate2/Run068.csv
          
        
          
            
            inst/extdata/plate2/Run069.csv
          
        
          
            
            inst/extdata/plate2/Run070.csv
          
        
          
            
            inst/extdata/plate2/Run071.csv
          
        
          
            
            inst/extdata/plate2/Run072.csv
          
        
          
            
            inst/extdata/plate2/Run073.csv
          
        
          
            
            inst/extdata/plate2/Run074.csv
          
        
          
            
            inst/extdata/plate2/Run075.csv
          
        
          
            
            inst/extdata/plate2/Run076.csv
          
        
          
            
            inst/extdata/plate2/Run077.csv
          
        
          
            
            inst/extdata/plate2/Run078.csv
          
        
          
            
            inst/extdata/plate2/Run079.csv
          
        
          
            
            inst/extdata/plate2/Run080.csv
          
        
          
            
            inst/extdata/plate2/Run081.csv
          
        
          
            
            inst/extdata/plate2/Run082.csv
          
        
          
            
            inst/extdata/plate2/Run083.csv
          
        
          
            
            inst/extdata/plate2/Run084.csv
          
        
          
            
            inst/extdata/plate2/Run085.csv
          
        
          
            
            inst/extdata/plate2/Run086.csv
          
        
          
            
            inst/extdata/plate2/Run087.csv
          
        
          
            
            inst/extdata/plate2/Run088.csv
          
        
          
            
            inst/extdata/plate2/Run089.csv
          
        
          
            
            inst/extdata/plate2/Run090.csv
          
        
          
            
            inst/extdata/plate2/Run091.csv
          
        
          
            
            inst/extdata/plate2/Run092.csv
          
        
          
            
            inst/extdata/plate2/Run093.csv
          
        
          
            
            inst/extdata/plate2/Run094.csv
          
        
          
            
            inst/extdata/plate2/Run095.csv
          
        
          
            
            inst/extdata/plate2/Run096.csv
          
        
          
            
            inst/man_backup/blum.Rd
          
        
          
            
            inst/man_backup/geom_sc.Rd
          
        
          
            
            inst/man_backup/plot_layout.Rd
          
        
          
            
            inst/man_backup/read.experiment.Rd
          
        
          
            
            inst/man_backup/set_center.Rd
          
        
          
            
            inst/man_backup/setup_templates.Rd
          
        
          
            
            inst/man_backup/slum.Rd
          
        
          
            
            inst/man_backup/slummarize.Rd
          
        
          
            
            inst/man_backup/writeMBAA.Rd
          
        
          
            
            inst/melt_.R
          
        
          
            
            inst/saxcyB.R
          
        
          
            
            inst/src/melt_dataframe.c
          
        
          
            
            inst/src/melt_matrix.c
          
        
          
            
            inst/src/symbols.rds
          
        
          
            
            inst/vignettes_backup/LumiR-knitr.Rnw
          
        
          
            
            inst/vignettes_backup/LumiR-knitr.pdf
          
        
          
            
            inst/vignettes_backup/LumiR.Rnw
          
        
          
            
            inst/vignettes_backup/raw_data_BioPlex.Rnw
          
        
          
            
            inst/vignettes_backup/raw_data_MasterPlex.Rnw
          
        
          
            
            inst/vignettes_backup/raw_data_xPONENT.Rnw
          
        
          
            
            man/blum-class.Rd
          
        
          
            
            man/concentration.Rd
          
        
          
            
            man/geom_sc.Rd
          
        
          
            
            man/plot_SC.Rd
          
        
          
            
            man/plot_layout.Rd
          
        
          
            
            man/read.experiment.Rd
          
        
          
            
            man/set_center.Rd
          
        
          
            
            man/setup_templates.Rd
          
        
          
            
            man/slum-class.Rd
          
        
          
            
            man/slummarize.Rd
          
        
          
            
            man/writeMBAA.Rd
          
        
          
            
            vignettes/LumiR.Rnw
          
        
          
            
            vignettes/TemplateDescription.Rmd
          
        
          
            
            vignettes/figure/plot-layout-1.pdf
          
        
          
            
            vignettes/figure/plot-layout-fig.pdf
          
        
          
            
            vignettes/figure/plot-layout.pdf
          
        
          
            
            vignettes/figure/plot_SC-1.pdf
          
        
          
            
            vignettes/figure/plot_SC.pdf