Description Slots Author(s) See Also
The class contains the summarized information for a Luminex xMap experiment. It contains the median fluorescence intensity for each well and analytes as well as information regarding the desing of the experiment.
phenoData
A AnnotatedDataFrame
.Contains the information
regarding the samples (e.g: sample_type, sample_name, well, filename, ...).
featureData
An AnnotatedDataFrame
. Contains the information
regarding the analytes: ID and name.
assayData
An environment
with two identically dimensioned
matrices with analytes as rownames and sample_id as colnames.
exprs
: The matrix
of the MFI.
concentration
: The matrix
of the concentrations
calculated for the MFIs in exprs
.
fit
A data.frame
. Contains the information regarding the
standard curve fitting: The values of the parameters to use in inv
for each couple analyte / sample_id.
formula
A formula
. The formula used for the standard curve
fitting. By default a 5-Parameters Logistic.
inv
A function
. The inverse function of the formula.
unit
A character
, "MFI".
protocolData
An optional AnnotatedDataFrame
, inherited from
ExpressionSet
.
experimentData
An optional MIAME
, inherited from
ExpressionSet
.
Renan Sauteraud
slummarize
, ExpressionSet
, blum
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.