setup_templates: Create templates
In RGLab/LumiR: Luminex multiplex array manipulation and analysis

Description Usage Arguments Details Value Author(s) See Also

Create files to be used as mapping files. The function will guess as much information as possible based on the data files. The created files may be incomplete and require user modifications but they ensure that the required columns are present.

1 2	setup_templates(path, templates = c("layout", "analyte", "phenotype"), write = TRUE)

`path`	A `character`. The pathname of an experiment folder. This is the same path as the one that will be used in `read.experiment`.
`templates`	A `character` vector. Can be any combination of "layout", "analyte" and "phenotype". A mapping file will be created for each selected template.
`write`	A `logical`. If TRUE, write the template files in the given `path`. When `setup_templates` is called through `read.experiment`, write is set to FALSE and the template files are not saved.

If a mapping file specified by the templates list already exists, the function will not overwrite the existing file. The files should be removed before running the function in order to create new mapping files.

An invisible list of data.frame to be used internally by read.experiment if one or more mapping files are missing from the given path.

Renan Sauteraud

read.experiment

RGLab/LumiR documentation built on May 8, 2019, 5:51 a.m.